Capsella rubella (pink shepherd's-purse): 17888244
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Entry
17888244 CDS
T02984
Name
(RefSeq) protein CCA1
KO
K12134
circadian clock associated 1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
17888244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crb03000
]
17888244
Transcription factors [BR:
crb03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
17888244
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
17888244
NCBI-ProteinID:
XP_006293847
UniProt:
R0HNC1
LinkDB
All DBs
Position
Unknown
AA seq
618 aa
AA seq
DB search
METNSSGEDLIIKTRKPYKITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ
IRSHAQKFFSKVEKEAEAKGVAIGQALDIAIPPPRPKRKPSNPYPRKTGSVTTTMSKPGV
NHGKDPLGSEKVLHPEMASEDRQQSKANENLQEDNCSDTHQSLSAASSMNKSSIETSNTS
IFREFLPSREEGNQSKGIRKDSNSENHCDLNAKSLENDVVNNEQEPQTYPRCIPVLVPMG
SSITSSLSHPSSEPDENKAPIHSLPRTVAGDYESFPNHIMSTLLHTPALYTAATFASSFW
PSDSGGSLPGQGNSPPNLAAMAAATVAAASAWWAANGLLPVCAPFSSGGFTSHPPTTFGP
CGDAEYTKTSALQHVSAQSRERIDQEHSEASKARSSLETGEIENKSKPECHEQPSATAET
EGSDGAAGRKQVDRSSCGSNTSSSSDDIEANASERQENDTNEEVKEMNEDTNNPQTSESN
ARRSRISSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQQQRYPMALDL
NLTSPLTPGDDQEEKRNTGFLSIGLGTSKLISRGKTGFKPYKRCSMEARESRILNPNPII
HVEQRDPKRIRLETRAST
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggagacaaattcttctggagaagatcttattattaagacgaggaagccatataagata
acaaaacaacgtgaaaggtggactgaggaagaacataatagattcattgaagctttgagg
ctttatggtagagcatggcagaagattgaagaacatgtagcaacaaaaactgctgttcag
ataagaagtcacgctcagaagtttttttccaaggtagagaaagaggctgaagctaaaggt
gtagctattggtcaagcgctagacatagctattcctcctccacggcctaaacgaaaacca
agcaatccctaccctcgaaagacgggaagtgtaactaccacgatgtcaaaaccaggtgtg
aatcatggaaaagatcccctcggatcagaaaaagtgttgcatcctgagatggccagtgaa
gatcgacaacaatcaaaagctaatgagaatctgcaggaagacaactgttcagatactcat
cagtccctctctgctgcatcctccatgaataaaagttctatagagacatcaaacacaagc
atttttcgggagttcttgccttcacgggaagaggggaatcagagtaaagggataagaaag
gactcgaattcggagaaccactgtgatttgaatgcaaaatctttggaaaacgacgtggta
aataatgagcaagaacctcagacttatccaaggtgtatccctgtgctagtgccgatgggg
agctcaataacaagttctctatcacatccttcttcagagccagatgagaataaggccccc
atacatagtcttccccgcacagttgcaggcgactatgagtcctttcctaaccatattatg
tcaacccttttacatacaccggctctctatacagctgctactttcgcctcatcgttttgg
ccttctgattctggtggtagcctacctggtcaagggaactcacctccgaatctggctgcc
atggctgcagccactgttgcagctgctagtgcttggtgggctgccaatggattgctacct
gtatgtgctccttttagttctggtggtttcactagtcaccctccaactacgtttggacca
tgcggtgatgcagagtacacaaaaacaagtgctttacaacatgtttctgcgcagagccga
gagaggatagatcaagaacactctgaggcatcaaaggctagatcgtcactggaaacaggg
gagattgaaaataagagtaaaccagaatgtcatgagcagccttctgcaacagctgagact
gagggttcagatggggcagcaggcagaaaacaagttgacaggtcttcgtgtggttcaaac
acttcctcgagtagtgatgatatcgaagcaaatgcatcagagaggcaagaaaatgacacc
aatgaagaggtgaaagaaatgaatgaagacactaataatcctcaaacttcagagtccaat
gcacgccgtagtagaatcagctccaatataaccgatccatggaagtctgtgtcagacgag
ggtcgaattgcttttcaagctctcttctccagagaggtgttacctcaaagttttacttac
cgagaagaacacagagaggaggaacaacaacaacaaagatatccaatggcacttgatctt
aacctcacatctccgttaactccaggtgatgatcaagaggagaagagaaacacaggattt
cttagtatcggattgggtacttcaaagctgataagtagaggaaaaacaggtttcaaacct
tataaaagatgttccatggaagccagagaaagtagaatcctcaaccccaatcctattatt
catgtggaacagagagaccccaaacggattcggttggaaactcgagcttcgacatga
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