Capsella rubella (pink shepherd's-purse): 17888269
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Entry
17888269 CDS
T02984
Name
(RefSeq) uncharacterized protein LOC17888269 isoform X1
KO
K19027
zinc finger FYVE domain-containing protein 26
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
17888269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crb03400
]
17888269
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
17888269
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_ZFYVE26
TPR_2
Motif
Other DBs
NCBI-GeneID:
17888269
NCBI-ProteinID:
XP_006293422
UniProt:
R0HM67
LinkDB
All DBs
Position
Unknown
AA seq
2497 aa
AA seq
DB search
MDKETEILSRLAANHLHLAQFEPLKATLLALRVRNPDLALTILQTIVSNAGRFDNVLWSR
SCPSPSLLSFLSTIELLRFENPTSPWGFDSETLSLRADFLLMVQVLIDRVTERIKEDQRV
ELESSEEEKRDENGGLGDCLRVLQGVLELGVERLKFDVDTSSSEGSNKIEEDAVVSLRSI
VLDYSDVFDALCCNIQRQLVGCESYDTCLVEEVQGEEQGREINEATTCIGSPELDNINVF
ALIQRNVQLAQLDAMKTKLDEGEERGAADHIRYLHLDYGVEKENYHAVLKALLSRVMEKK
DDYGDPWQMVRQNLLFIYKEALSSNCGDLVQMIQGIQDDMLLPDSQLHLSLDSEQIPLPL
ECFRRYLVDLKAERNIEEKCSPMSRAINSCRRDLYHYARISGSHVLECVMCAALSSVKKE
KLQEANDVLSLFPRLRPLVASMGWDLLPGKTATRRKLMRLLWTSNSQAIRLEESSLYGNQ
TDEKSCVEDLCDTLCYQLDLASFAACVNSGKSWTPKESFLMHGNASSEHDDAEVDPFVEN
LVLERLSAQSPLRVLFDVVPGIKFQEAISLISMQPIASTAEAWKRIEDIELMHMRYALEA
IVLALGAMEEAMKNETDASRRVVFYHLKDLTNHLEAIKNFPRKIMMVNIVISLLHIDDIR
LSSTQCVSSECFSGKGDMPDLDLGDLVTDGETKIVISFTRQLLDVLRRNLPSHLVEQECQ
LDGNYSADGRQALEWRVSMAKQFIEDCEWRLSVMQHLLPLSERQWGLKEVLSVLRAAPAK
LLNLCMQRAKYDIGEQAVHRFALSAEDKATLELAEWVDNAFKGTLVEDVMSRTAEGASAV
QDLDFQSLGSQLSPLAVILLCIDAAASSAKSPTISKQLLDKSQVMLSEIYPGGSPKVGFT
YWDQVHEVAIISVLRRILKRLQEFLEQDNPQILQASFSGDTIISSSTESHRQGQKDRALA
MLHQMIEDAHRGKRQFLSGKLHNLARALADEKPEVNVVNGDGSDMAIEKDGVLGLGLKYA
KQSPGSENRDADGNSVSHETEDKEKKSFGPLSNKTSTYLSQFILYTAAIGDIVDGTDTTH
DFNFFSLVYEWPKDLLTRLVFDRSSTDAAAKVAEVMSADFVHEVISACVPPVYPPRAGHG
WACIPVIPTTPCSHSEGKVLSPSKEAKPNSYVRSSATPGVPLYPLQLDIIRHLVKISPVR
AVLACVFGGSILYNGSDSVISSSLNDEFPISPDADRLFYEFSLDQSERFPTLNRWIQMQT
NLHRVSEFVVTPKQKPEDTQIKPDERTGIKRLLEHDSDSESDTEELFSKNNIQPALTDGS
TRDGGSFDTGICRTDPTVFLSFDWENEVPYEKAVNRLIDEGKLMDALALSDRFLRNGASD
WLLQLLIRSSEENPSTLGISQGYGSQSNSWQYCLRLKDKQLAATLALKYMHMWELEAALN
VLTMCSCHLLQSDPISLEVLHRRQALQKYSHILSADNRHSSWQEVEAECKEDPEGLALRL
AGKGAVSAALEVAESAGLSIDLRRELQGRQLVKLLTTDPLSGGGPAEASRFLSSLQDSAD
ALPVVMGAMQLLSDLRSKQLLVHFFLKRKDSNLSDLEVARLNSWALGLKVLAALPLPWQQ
RCSSLHEHPNLIFEALLMRKQLQYASLILKEFPALRDNNVIMAYAAKAISVTISPPPREP
RITVSASRLRQKPRAGPAVKASFTNSLSNFQREARRAFSWAPRNAENRTTSKDVYRKRKN
SGLGASERAAWEAMTGIQEDHGSSYSADGQDRLPSVSIAEEWMLSGDTTKDEAVRASHKY
ESTPDIILFKALLSLCSDELVSARSSLDLCIRQMKNVLCSKQLSEGASVETIGRAYHATE
AFVQGLSYAKSLLRKLLGATESTNNNGERSKDVDDISSDAGSSSVGSQSMDEPSKVLSLA
EIWLGRAELLQSLLGSGIAASLDDIADQVSSGCLRDRLISDERYSMAVYMCKKCKIDVFP
VWKAWGLALLRMERYAQARVKFKQAFQLKGEDIPDVIQEIINTIEGGPPVDVSTVRSMYD
HLAKSAPTILDDSLSADSYLNVLHMPSTFPRSERSRRSLESEKNNSVPGSDFEDGPRSNL
DSTRYSECTNYLQEHARQNLLGFMFRHGHYKDACMLFFPLSALPPPLQTSSVGAVSSTSS
PQRTDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESVKHQDQTINQYTAGALTRIC
AFFEINRHFNYLYTFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKAHFEEALTAR
HRGSDSKKLVTKGIRGKSASEKLSEETLVKLSSRVKMQIDVVKSFSDSEGEPWKHSLFGN
PNDSETSRRRCEIVETLVEKNFDLAYPVIYEFKLSAVDIYAGVAASLAVRKKGSQLTELF
KNIKGTIQDDDWDQVLGAAINVYANKHKERPDRLIDMLTSSHRKVLACVVCGRLKSAFQI
ASKSGSVADVQYVAHQALHANSLNVLDMCKQWLAKYM
NT seq
7494 nt
NT seq
+upstream
nt +downstream
nt
atggataaggaaacggagattctctctcgtctcgcggcgaaccaccttcacctggctcaa
ttcgagccattgaaggctacgttactcgctctcagggttcgtaaccctgacctcgcactc
acgattcttcaaaccatcgtctctaacgctggaagattcgataatgtcctctggtcacgc
tcttgcccttcgccgtctcttctctctttcctctccacgattgagcttcttagattcgag
aatcctacttctccttggggttttgattcggagactcttagtttgcgtgcggattttttg
ttgatggtccaggttttgatcgatagggttactgagaggattaaggaagatcagagagtt
gagttggagagtagtgaggaagagaaaagggatgagaatggtggattgggagattgtttg
agggttttgcaaggtgttttggagttgggtgttgagaggttgaaatttgatgttgatacg
agtagtagtgaaggaagtaataagattgaggaggatgcagttgtgtctttgaggagtata
gtattggattactctgatgttttcgatgctttgtgttgtaatatacagaggcaacttgtg
ggttgcgagagttatgatacatgtttggtggaggaagttcagggagaagaacaggggagg
gagattaatgaggccaccacatgcattggttctccggagctggataacatcaatgtgttt
gctttgatacagaggaatgttcagttagcacagttggatgctatgaaaacaaagttagat
gaaggggaggagcgtggggcagctgatcacattcgttatcttcaccttgattatggagta
gagaaagagaattatcatgctgttctaaaagctctcctttcaagagttatggagaaaaaa
gatgattatggtgacccctggcagatggtgcgccagaacttgctgtttatttataaagaa
gctctctcatcgaattgcggagatcttgttcagatgatccagggtattcaagatgatatg
ctcctaccagatagccagctacatttatctctcgacagtgaacaaattccactccctctt
gagtgtttccggcgatatctggtagacttgaaagctgagagaaatatagaggaaaaatgt
tcccctatgagcagggcaattaattcttgtcgcagagatctgtatcattatgctcgtatt
tctggatcacatgtgctagagtgtgtgatgtgtgctgctttgtcttctgtaaaaaaagaa
aagcttcaggaagctaatgatgttctttctttgtttccccgacttcgcccattagtagct
tccatgggttgggatctattgccgggcaaaactgcaacccgcagaaaattgatgcggcta
ctttggactagtaactcccaagcaatccggttggaagaatcttctctttatggaaaccaa
acagatgaaaaatcttgtgtggaagacctctgcgatacattatgctatcagttggacctt
gcatcttttgctgcttgtgtcaattctggtaaatcatggactccaaaggaatctttcttg
atgcatggtaatgcgtcatctgagcatgatgatgctgaggtggatccttttgttgaaaat
cttgtgttggaaagactctcagcgcagagtccacttcgggtattgtttgacgttgttccg
ggcataaaattccaagaagctatttcactaattagtatgcaacctatcgcttcaactgca
gaagcctggaagaggatagaagatattgaactgatgcatatgcgttatgctttggaggct
attgttttagcactaggtgcaatggaagaggccatgaaaaatgagacggatgctagtcgt
cgagtggtattttaccatttaaaagacctcactaaccatctggaggccattaaaaatttt
ccacgcaagattatgatggtgaacatagttatttcactgttacatattgatgatatccgt
ctcagttctacacaatgtgtctcatcggagtgtttttctgggaaaggtgatatgcctgat
ttagatcttggcgatcttgttactgatggggaaacgaaaatagttatatctttcacaaga
cagctacttgatgttttacgccgcaatcttccatcacatctggttgaacaagagtgtcag
ctggatggtaactacagtgctgatggaagacaggctttagaatggagagtatctatggct
aagcaattcattgaagattgtgaatggcgattatctgttatgcagcatcttctgccactt
tctgaacgtcagtggggtttaaaggaggttttgagtgttctcagggcggcccctgcaaaa
ctacttaacctctgtatgcaaagagctaagtatgacattggagaacaggcagttcatcgg
tttgcgttatcagcagaggacaaagccactctcgaattagctgaatgggttgataatgcc
ttcaaaggaacactggtagaagatgtgatgtctcgtactgctgaaggagcatctgctgtg
caagatttagattttcaatctttaggttctcaactgagtccattagctgtgattctacta
tgcatagatgcggctgcttcttctgccaagtctccaacaatttccaaacaacttttagat
aagtctcaagttatgttatcagaaatctaccctggaggatctccgaaggtggggtttact
tactgggatcaagtccacgaagttgcaataatctctgtactgcgaaggatcttaaagcgc
ctgcaggaattccttgaacaggataaccctcaaatacttcaagccagttttagtggagat
accataatttcatcttctacggaatctcatagacagggacaaaaagatcgtgctcttgca
atgctacatcaaatgattgaagatgctcataggggcaagagacagtttctgagcggtaag
cttcataacctagcaagagcacttgctgatgaaaaaccagaagttaatgtagtcaacggg
gacggatcagacatggccattgagaaggatggagttcttggtcttgggctaaaatatgca
aagcaaagtcctggttcagaaaatagagacgctgatggaaattctgtatcccatgaaaca
gaagacaaggaaaagaagtcatttggcccgctaagcaacaaaacctctacctatctatct
cagtttatactctatactgctgctattggtgacatagtcgatggaactgatacaacccat
gatttcaactttttctctcttgtttatgaatggcctaaagacctattgacgcgtctggtg
tttgatcgaagtagcacagatgcagctgcgaaagttgctgaagtcatgtctgctgatttt
gttcatgaagtgatatcagcttgtgttcccccagtttatcctccacgtgctggtcatggg
tgggcttgtattcccgtcattccaaccactccatgttctcactcagagggtaaagtgctc
tctccttcaaaagaggccaaacccaactcttatgtccgttcctcagcaacacctggtgtc
cctttgtatcctcttcagttggatattatcaggcatttggtaaaaatatccccagtacga
gcagttttagcttgcgtatttggtgggagcatattgtacaatggcagtgattctgtcata
tctagttctttgaacgatgagtttccaatttctcctgatgcagacagattgttttatgaa
ttttctcttgaccagtctgagaggtttcctactttaaaccgatggatacaaatgcaaact
aatcttcatcgagtttctgagtttgttgtgacacctaaacaaaaacctgaagacacacag
attaaacctgatgaaagaactgggatcaagagacttcttgaacatgacagcgactcggag
tctgatacagaagagcttttttctaagaataacattcaaccagcattgacagacggcagt
acacgagatggtggatcctttgatactggaatttgtagaactgatcctacagttttcctt
tcttttgattgggagaatgaagtaccatatgagaaagctgtaaatagattaattgatgaa
ggaaaactaatggatgctttagcactttcggaccgcttcttgcggaatggggcttctgat
tggttacttcagctcctaatcagaagtagcgaagaaaatccttcgacattaggaatatct
cagggatatggaagtcagagcaacagttggcagtattgcctgcggctaaaggacaaacag
ctggcagcaacactggctcttaagtatatgcatatgtgggagcttgaggcagccttaaac
gttcttacaatgtgtagctgtcatctcttacaaagtgatccaattagtctcgaggtgttg
cataggagacaagctctgcagaagtacagccacatactttctgcagataatcgccatagt
agctggcaagaggtagaagccgaatgtaaagaagaccctgaaggcttggctctaagattg
gctggcaaaggagctgtttccgctgcattggaagtggctgaaagtgcaggattatcaata
gatctcagaagagaattacaaggacgacagcttgtaaagcttctaaccactgatccactc
agtggtggtggtcctgcagaagcatctcgatttctatcttcacttcaagactcagctgat
gctctaccagtggttatgggtgcaatgcaattattatctgaccttcgttcaaaacagctc
ctggtccatttctttctgaagcgaaaagatagcaatctgtcagatttggaagttgcccgg
cttaattcttgggctttaggtctgaaagtgttagcagcattgccacttccttggcagcag
agatgttcttcgcttcatgagcatcccaatttaatatttgaagctctgctgatgagaaaa
caattacaatatgcctcactgatactcaaagagttcccagcattgagggataacaatgtt
atcatggcctatgcagcaaaagctatatctgttacgattagcccaccacctagagaacct
cgaattactgtgtctgcgtcaagactaagacaaaagccaagagcaggaccagcagtaaaa
gcatctttcactaatagcttaagcaattttcagagagaggctcgaagggcattttcatgg
gctccacgtaatgctgaaaacaggacaacgtcaaaggatgtttatcgtaaaagaaagaat
tccggactgggggcttctgaaagagctgcatgggaggcgatgacaggtattcaagaggat
cacggttcatcttattcggcagatgggcaagataggctaccttctgtttctattgctgaa
gaatggatgctaagtggcgacacaaccaaagatgaagctgttcgcgcatctcacaaatat
gaaagcacccccgatattattctttttaaggctctgctctcactttgttcagatgagcta
gtatcagcaagaagttccctggatctatgcatcaggcaaatgaagaacgtattgtgctcc
aagcagttgtcagagggtgcatctgttgaaacaataggccgagcatatcatgcgacagag
gcatttgtgcaaggattgtcttatgcaaagtctttgctgagaaagcttttaggtgccact
gaatcgacgaataacaatggtgaaagaagtaaagatgttgatgatatttcttctgatgct
ggcagctccagtgttggcagtcaatcaatggatgaaccatccaaagttctctcacttgca
gaaatctggttggggcgcgcagagttgctgcagagtctcttagggtctggaattgctgct
tctcttgatgacattgctgatcaagtgtcatccggatgtctacgagacagattaatatct
gatgaacgatatagtatggcggtgtatatgtgcaagaaatgcaagattgatgtttttccc
gtgtggaaagcatggggtcttgctctgttacggatggagcgctatgctcaagctcgagtt
aaattcaagcaagcctttcaattaaagggggaagatattcctgatgtcattcaggagata
ataaatacaatagaaggaggtccacctgtggatgtgtcaactgtccgttctatgtatgac
catttggcaaaaagcgcgccaacaattttggatgattctttatcagcagactcatacctg
aatgttctgcatatgccatccactttccctcgttcagagaggtcgaggagatctctggaa
tcagaaaaaaataattctgtacccggttcagactttgaagatgggccgcggagcaacttg
gatagtacacgctattctgagtgcaccaactacttgcaggaacatgctcgccaaaacctg
cttgggtttatgttccgccatggtcactataaagatgcatgcatgttattctttccgcta
agtgctcttccccctcctttgcaaacttcatctgtgggcgcagtaagctcaacttcatca
cctcagcggacagatccattggcaactgaatatgggaccattgaaagtttgtgcgaattt
tgtgtcggctatggagctatctcatcccttgaggaagtaattacagaaagacttgaatct
gtaaagcatcaagatcaaaccataaatcagtacacagctggagctcttacacgtatctgt
gctttctttgagatcaaccggcatttcaattacctttacacgtttctggtactcaagaag
gattatgtcacctctgggtattgctgtattcagctttttatgaattctacaactcaggag
gatgctgtaaggcatcttgagcatgcaaaggcacactttgaagaagccttgacagcgcgt
catagaggctcagactcgaaaaaacttgttacaaagggtattagaggaaaaagtgcctca
gagaagttaagtgaagaaactcttgttaagttatcctctcgggtgaaaatgcagattgat
gtggtgaagtccttcagtgactctgaaggagaaccatggaagcattccttgtttggaaat
ccaaatgattcagagacatccaggagaagatgtgaaatagtggagactcttgttgagaaa
aatttcgacttagcttatcctgttatatatgaattcaagctctcagctgttgatatatat
gctggtgttgctgcatcactagccgtgaggaagaaaggcagtcagttgacagaacttttc
aaaaacattaagggaacaatccaagatgatgactgggatcaggtactgggtgctgccatc
aatgtctatgccaacaagcacaaagagcgccctgaccgtctcattgacatgttaacaagc
agccatcgaaaggtgctggcttgtgtggtatgtggccgcctgaaaagcgcattccaaatt
gcatctaagagcggaagtgtggctgatgttcaatatgtagctcatcaagccctacatgcc
aattcgctcaatgtactcgatatgtgcaagcaatggctagctaaatacatgtaa
DBGET
integrated database retrieval system
