Capsella rubella (pink shepherd's-purse): 17888309
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Entry
17888309 CDS
T02984
Name
(RefSeq) ATP-dependent helicase BRM isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
17888309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17888309
03036 Chromosome and associated proteins [BR:
crb03036
]
17888309
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
17888309
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
17888309
Chromatin remodeling factors
BAF complex
17888309
PBAF complex
17888309
GBAF(ncBAF) complex
17888309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
QLQ
ResIII
DEAD
AAA_14
HDA2-3
Bromodomain
Motif
Other DBs
NCBI-GeneID:
17888309
NCBI-ProteinID:
XP_023639615
LinkDB
All DBs
Position
Unknown
AA seq
2188 aa
AA seq
DB search
MQSGASGGGPPRNLPMGPAGRTASTSSAASPSSSSSSVQQQQHQQQQQQQQQQQQLASRQ
QQQQLRNSDANENMFAYHAGGVQGMVGGGNFGASPGSMQMPQQSRKFFESSQQQPGSSQE
GQQTFNPMQQAYIQFAMAQQQKAQHQARMGMMGSSSLGAKDQDARMGMLNMQDLNPMQAS
SLPQASSSKPSSDQFSRGERQMESGSQQRNETKSHPQQQVATGQLTPGNMIRPMQAPPPQ
QAVNNMANNQLAFAQQWQAMQAWARERNIDLSHPANANQMAHILQARMAAQQKANEGNVP
SQSPSIPISSQPASSSVVPGESSPRTNSASDISGQSGSAKARHAISSGSFASTSSPRMVN
PAMNPFSGQGRDNPMYPRHLVQPTNGMPSGNSLQASASETPVLDQNAPTKKSLGPAEHSQ
MQQPRQLHAPTPNLAALSDTGPLGNSSLPTGQGTQQAQQRSGFTKQQLHVLKAQILAFRR
LKKGEGSLPPELLRAIAPPPLELQMQRQMSPVRGQVQERSSDNQARSLECGKESQAAASS
NGPVFSKEEDNVGDTEVALTTGHNQLFQNLGKEPTSSDAATKEEQQTDVFPVKSDQGADT
SNPKNPRSDSTADKGKAVACDGSQSKIPAQENSPQPPKDAAAARKYHGPLFDFPFFTRKH
DTYGSATANANNNLTLAYDIKDLICEEGAEFFNKKRTDCLKKINGLLAKNLERKRIRPDL
VLRLQIEEKKLRLSDLQSRVRDEVDRQQQEIMSMPDRPYRKFVRLCERQRLEMNRQVLAN
QKAVREKQLKTIFQWRKKLLETHWAIRDARTARNRGVAKYHEKMLREFSKKKDDGRNKRM
EALKNNDVERYREMLLEQQTNIPGDAAERYAVLSSFLTQTEDYLHKLGGKITATKNQQEV
EEAANAAAIAARLQGLSEEEVRAAAACAREEVVIRNRFTEMNAPKENSSVNKYYTLAHAV
NEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME
FKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLV
TTYEFIMYDRAKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL
KELWSLLNLLLPDVFDNRKAFHDWFAQPFQREGPAHNIEDDWLETEKKVIVIHRLHQILE
PFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPI
YQAKIYRTLNNRCMELRKACNHPLLNYPYFNDLSKDFLVRSCGKLWILDRILIKLQRTGH
RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIR
AAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKISSHQKE
DELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR
MTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQVP
KWLRASTKEMNAAVADLSKKPSKNMLSSSNLIVQPNGPGGERKRGRPKSKKINYKEIEDD
IAGYSEESSEERNIDSGNEEEGDIQQFDDDELIGALGDHQTNKGESDGENPACGYDYPPG
SGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEE
GEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQAAERVDGSEMPV
AQSLQVDRSYRSKLRTVVDSHGSRQDQSDSSSRLRSLPAKKVANTSKLHVSSPKAGRLNP
TQHSVEDNVEASRETWDGTSPIGSSNTGARMSHIIQKRCKNVISKLQRRIDKEGQQIVPM
LTNLWKRIQNGYAAGGVNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYGFSH
EVRSEARKVHNLFFDLLKMSFPDTDFREARNALSFSGPTPNLVSTASPRGVGISQGKRQK
LVNEGEPEPSSPQRPQQRENSRIRVQIPQKETKLGGTTSHTDESPVLAHPGELVICKKKR
KDREKSAPKTRTAGSSSPVSPPPAMIGRGLRSPVSGAVPRETRLAQQQRWPNQPTHPNNS
GAAGDSVGWANPVKRLRTDSGKRRPSHL
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggagccagtggcggaggtccccctcggaatctgcccatgggtccggctggg
cggactgcctccacctcatccgctgcttctccttcttcttcatcttcatctgtgcagcaa
cagcagcaccaacaacaacagcaacagcagcaacagcaacagcagctggcgtctaggcag
cagcagcagcagctgagaaactctgatgcaaatgaaaacatgtttgcatatcatgctggt
ggggttcagggaatggtgggaggtggcaactttggtgcgtctccaggctctatgcaaatg
cctcagcagtctaggaaattctttgagtcttctcaacaacaaccgggttcttcccaagag
ggccagcaaacttttaatcctatgcagcaagcctatattcagtttgctatggctcagcaa
caaaaagcacagcaccaagctaggatgggaatgatgggttcatccagtttgggggcaaag
gatcaagatgcacgcatggggatgctcaatatgcaagacttgaatcccatgcaggcatct
agtctgccccaggcctcatcctctaagccatccagcgatcagttttctcgcggtgaaagg
cagatggaatctggttctcagcaaaggaacgaaacaaaatctcatcctcagcagcaggtg
gctaccggacaactaacgcctggaaatatgataaggccaatgcaggcaccacctcctcaa
caggctgtcaacaacatggcaaacaaccaactcgcatttgcacaacagtggcaggcgatg
caggcatgggcgcgtgagcgtaatatcgatctctcacatcctgccaatgccaaccaaatg
gcacatatccttcaggcaagaatggctgcccagcagaaagctaacgaaggcaatgtgccg
tcacagtcaccatctattccaatctctagccagccagcttcatcttccgttgttcctggt
gaaagttcaccgcgtaccaactctgctagtgatatctctgggcagtcaggatcagcaaag
gccagacatgccatatctagtggctcatttgcctcgacttccagtcccagaatggttaat
cctgctatgaatcccttctctggccaagggagagataatccaatgtatcctcgacattta
gttcagcctacaaatgggatgccctcaggaaattccctgcaggcgtctgcgtctgagact
cctgttttggatcagaatgcgcctacaaaaaaaagtttaggtcctgctgaacattcacaa
atgcagcagcctaggcaactgcatgcaccgactcctaatttagcagctctgtctgatact
ggtccactcggtaactcttcccttccgactggacaggggacccaacaagcacagcagcga
tcaggatttaccaaacaacaactccatgttctcaaagcccagatactggcatttagacgt
ttaaagaaaggggaaggttctttgcctcctgagcttcttcgagctattgctccaccaccg
cttgaactgcagatgcagaggcaaatgtctcctgtgagaggacaagttcaggaaagatct
tcagacaaccaagcaaggtcgctagagtgtggaaaagagtctcaggctgctgcttcttca
aatggaccggttttttctaaagaggaagataatgttggagatacagaagtagctttgacg
acaggccacaaccaattatttcaaaacctgggaaaagaacctacgtcttctgatgcggcg
acaaaagaggagcaacaaactgatgtattccctgttaagtcagaccaaggagcagatact
agtaatccaaagaatcctagaagtgattctacagctgataaaggaaaggctgttgcatgt
gatggaagccaatctaagattcctgcacaagaaaactctcctcagccgcctaaggatgca
gccgctgccaggaaatatcatggaccattgtttgattttccctttttcactcgaaaacat
gacacttatgggtctgcaacagctaatgccaataacaatctcacattagcatatgatatt
aaagatctgatttgcgaagaaggtgcagagttctttaataagaaaagaacagactgtttg
aagaagataaatggtctactagcaaaaaatttagaaaggaaaaggattaggcctgatctt
gttttacggctccaaattgaagagaaaaagcttaggctatcggatctccagtctcgtgtt
agagatgaagtggatcgacaacaacaggagataatgtccatgccggataggccataccgc
aaatttgtgaggttgtgcgaacggcaacgccttgaaatgaatagacaagtactggccaac
cagaaagctgttagagagaagcagctgaaaaccatttttcagtggcgcaagaaactcctt
gaaactcactgggctatacgtgatgcacgcactgctcgcaacaggggagtggccaaatac
catgaaaaaatgttgcgagagttttcaaagaaaaaagatgatgggcggaacaaaagaatg
gaagccttgaagaataatgatgtagaaaggtacagggagatgttactggaacaacaaaca
aatatacctggtgatgctgctgaaagatatgctgttctctcttcattcttgacccaaacc
gaagattatcttcataaacttggaggtaagattactgccacaaagaatcaacaggaagtg
gaggaggcagcaaatgctgcagcaatagcagcgagattgcagggcttgtcggaagaagag
gtcagggcagcagctgcttgtgctcgagaagaagttgtgatcagaaatagatttacggaa
atgaatgcaccaaaagaaaattcatctgtcaacaagtattatacgctggctcatgctgtg
aatgaagtggttgtgagacaaccttcaatgcttcaagctggaactttgcgtgattaccag
ctggttggcctacaatggatgctatcgttgtataataacaaattaaatgggatcttggct
gatgagatgggtcttggaaaaactgtgcaggtaatggcactgattgcttacctaatggag
tttaaggggaattatggaccacatctcatcattgttcccaatgctgtactggtgaattgg
aagagtgaactccatacttggctgccatctgtttcatgcatttattatgttggtacaaag
gatcaacgttcaaaattattctctcaggaggtttgcgccatgaagttcaatgtccttgtt
acgacttatgagttcattatgtatgatcgagcaaaactctcaaaagttgactggaaatat
attataattgatgaagcacaacggatgaaggacagggaatctgttctggctcgagatctt
gaccggtatcgttgccagaggagattacttctcactggaacacctttacagaacgatcta
aaagagctttggtcgctattgaaccttctccttcctgatgtctttgacaatcgaaaagca
tttcatgattggtttgcacaaccttttcaaagagaaggacctgcacataatatagaagat
gactggctagagactgaaaaaaaagtcatagtcattcacagacttcatcaaatattagag
ccattcatgctcagacgccgtgttgaggatgtggaaggttcacttcctgctaaggtttct
gtagttttgagatgtagaatgtctgctattcagagtgccgtttatgattggattaaagcg
actggaactcttagagttgatccagacgatgagaaacttagggctcagaagaacccaata
taccaagccaagatatatagaaccttaaataataggtgcatggagttgaggaaagcctgc
aatcatcctttgctcaattatccatatttcaacgacttgtccaaagattttcttgtacgg
tcatgtggaaaattgtggattctggatagaatccttataaagctacagaggacaggccat
cgtgtattgctcttcagtacaatgactaaactccttgatatcttggaagagtatttgcaa
tggagaaggcttgtatacagaagaatagatgggacgaccagcctagaagatcgagaatca
gctattgtggacttcaatgatcctgatacggattgctttatcttcttgcttagtatacgt
gcagctggacggggtctcaaccttcaaactgctgacacagttgtgatatatgatccggat
cccaatcccaaaaatgaggaacaagcagttgccagagcgcatcgtatagggcagacaagg
gaagtaaaagttatttatatggaggcagttgttgaaaaaatttccagccatcaaaaggag
gacgagcttagaagtggtggttcagttgacctagaggatgacatggctgggaaggaccga
tatataggatctatagagggtctgataaggaataatattcaacagtataagattgacatg
gctgatgaggtcattaatgctgggcgttttgaccaaaggacgactcatgaagagcgacga
atgacattagagactttgttgcatgatgaagagagataccaagaaactgtccatgatgtg
ccttctctgcatgaggtgaacaggatgattgccagaagcgaggaggaagtcgagttattt
gatcagatggatgaagaatttgactggacggaggagatgactaatcatgagcaggtgcct
aaatggcttcgagctagtacaaaagagatgaatgctgctgttgctgatttgtctaagaaa
ccgtcaaagaacatgttgtcgagtagtaatctgattgtgcaacccaatggaccaggaggt
gagagaaaaagggggcggcccaagagcaaaaagattaactacaaggaaattgaagatgac
attgctggttactctgaggaaagctctgaagaaaggaacattgattctgggaatgaagaa
gagggagacattcaacaatttgatgatgatgaacttattggcgctcttggtgatcaccaa
accaacaagggagaatctgatggagagaaccccgcctgtggttatgattatcctccgggc
tctggtagttataagaaaaatcccccacgtgatgatgccggttcttcaggatcttctcca
gagagccatagatcaaaagagatggcatctcctgtttcttcacaaaagtttggttctttg
tctgcgttggacactaggccaggttccgtctcaaaaagactgctggatgacctagaagaa
ggggaaatagcagcatcaggggattctcacatagatctccaacgatcaggaagttgggcc
catgaccgggatgaaggggatgaagaacaggttttgcaacctacgataaaacggaaacga
agtattcgtctaagaccccgtcaagcggcagaaagagtagatggtagtgagatgcctgta
gctcagtcattgcaagtcgatcgtagctatcgatcaaagttgaggacagttgttgactcg
catggttcaagacaagatcagagtgattcatcctcaaggcttaggagtttacctgcaaag
aaggtagctaatacatccaagctgcatgtatcatcgccaaaagctggtagattgaatcct
acacagcattccgtggaagataatgttgaagcttccagagaaacatgggatggaactagt
cctattggctcttcaaatactggtgcgagaatgtcccacatcatacagaaacggtgcaaa
aacgtgattagcaagctccaaaggagaatcgacaaagaaggtcagcagattgtacctatg
ctgacaaatttgtggaagagaattcagaatggttatgcagctggaggtgtgaataacctt
ttggaactacgagagatagatcaccgggtcgaaaggctagagtacgcaggagttatggaa
cttgcatctgacgttcagttgatgctaaggggagcaatgcaattctatggattttcacac
gaggtgagatctgaggcaaggaaggttcacaatctgttctttgatttattgaagatgtct
ttcccagacacagatttccgggaagcaaggaatgctctttccttctctggcccaacccca
aatttggtgtctacagcatcccctagaggagtaggcattagccaaggcaagaggcaaaag
ttggtaaacgagggggaacccgagccaagctctccgcagagacctcaacaacgtgagaac
tcaaggatcagagtacaaataccgcagaaagaaacaaagcttggggggacaacaagccac
actgatgaatccccagttttagctcatccaggggaattagtaatctgcaaaaagaagagg
aaagaccgtgagaagtctgcgccgaaaacccgaactgctggctccagcagcccggtttca
ccacctccagctatgattggtcgcggtctaagaagtcctgtatctggtgcggttccaagg
gaaacaaggctagcacaacagcagcggtggccaaaccaacccactcatccaaacaacagt
ggtgcagctggtgattcagtgggatgggctaatccggtgaagaggttaaggacagattct
ggtaaaagacggcctagccatttatag
DBGET
integrated database retrieval system
