Capsella rubella (pink shepherd's-purse): 17888438
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Entry
17888438 CDS
T02984
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17888438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17888438
Spliceosome [BR:
crb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
17888438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
PRP4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
eIF2A
Beta-prop_SPT8
WD40_like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
17888438
NCBI-ProteinID:
XP_006293943
UniProt:
R0FW60
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MEPNKEDNVSLTSTAQILQDASSQPGFSAIPPVVPPSFPPPMAPIPMMPHPPVARPPTFR
PPVSQNGGAKTSESDSDSDGEHFEISEESRQVRERQEKAMQELLIKRRGAAVAVPTNDNA
VRDRLRRLGEPITLFGEQEMERRSRLAGLMGKLDFEGQLDKLLKAHEEDAAPKEDVDDEV
PEYPFFTEGPKELREARIEIAKFSVKRAAVRIQRAKRRRDDPDEDMDAETKWALKHAKDM
VLDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNKIAVLKDHKERATDVV
FSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGRYLGTTSFDKTWRL
WDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIRP
VLSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATAS
YDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSENGEDED
EGKETMDVDL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaaggaagataatgtctcattgacatctacagctcaaattctacaagat
gcctcctctcagccaggtttctctgccataccacctgtggttcctccttcctttccccca
ccaatggctccaataccaatgatgccacatcctccagttgcccgcccacctacttttagg
ccacctgtttcgcaaaatggtggagcgaaaaccagtgaatcggattcggattcagacggt
gaacattttgagatatctgaagagagtaggcaggttagagaaagacaggaaaaggcaatg
caagagttgttgataaagcgtcgtggtgctgctgtcgcagttccaacaaatgacaatgct
gttagggatcgccttagacgtcttggggaacccattactctatttggagaacaggaaatg
gagagaagatctaggctggctgggcttatgggtaagcttgatttcgaggggcaattggat
aaattgcttaaagctcacgaagaagatgcggctccaaaagaggatgtggatgatgaagta
cctgaataccctttttttactgagggtccaaaggaacttagagaggctagaatagaaatt
gccaagttttctgtcaagagagctgctgtcaggattcagcgtgcaaagcggcgaagggat
gatccagatgaagatatggatgcagagactaagtgggctttaaagcacgctaaagacatg
gttcttgattgcagtaattttggtgatgatcgtccacttaccggctgctccttctcacgt
gatgggaaaatacttgccacatgttctctaagtggagttactaaattgtgggagatgcct
caagttacaaacaagattgctgtcttgaaggatcacaaagaacgtgcaactgatgtagtg
ttctcccctgtggacgattgtctagcaactgcttctgctgatcgaactgcgaagctatgg
aaaactgatggaacgcttctacaaacttttgaaggccatttggatcgtcttgcacgtgtt
gccttccacccgtcagggagatacctgggaacaaccagctttgacaaaacatggagattg
tgggatataaacacgggtgcagagctgcttttgcaagaaggtcacagtcgcagtgtctat
ggaattgcttttcaacaagatggagctttagcagcttcttgtgggcttgattcactcgct
cgggtttgggatctccgcactggtaggagtattcttgtcttccaaggacacatcagacct
gttctctcagtgaatttctctcctaatggctatcacttggcatctggtggtgaggataat
caatgccgtatttgggatctaagaatgaggaagtcattgtacatcatcccagctcatgct
aacctcgtgtctcaagtgaaatacgaaccacaagaaggctacttcctggccactgcgtca
tatgacatgaaagtcaatatatggtcaggaagagatttctcgctggttaaaagcttagca
gggcatgagtcaaaagtcgcctctctcgatatcactgcagatagctcgtgtatcgcaact
gtatcacatgaccgcaccatcaagctttggacaagcagtgaaaatggtgaagatgaagac
gaagggaaagaaacaatggacgtagatctttag
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integrated database retrieval system
