Capsella rubella (pink shepherd's-purse): 17888462
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Entry
17888462 CDS
T02984
Name
(RefSeq) protein VACUOLELESS1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
17888462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crb04131
]
17888462
Membrane trafficking [BR:
crb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
17888462
Hops complex
17888462
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
ANAPC4_WD40
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
17888462
NCBI-ProteinID:
XP_006296131
UniProt:
R0HHA4
LinkDB
All DBs
Position
Unknown
AA seq
858 aa
AA seq
DB search
MANVSVAAEWQLLYDRYYRKPEIYQMRWKHVDLSRNKVACASFGGPIAVIRDDSKIVQLY
AESALRKLRIFNSAGILLSETIWKHPGGRLIGMSWSDDQTLICIVQDGTIYRYNIHAELI
EPNMSMGKECFEQNVVECVFWGNGVVCLTEGGQLFCISDFEMMKPFKLPDVPGLTEDDML
QPTCLAVREPEYTMSGTVEVLVAVGDEIFGVEEDSVQTFRVDEPSFKDSETQNDDYGNLI
GPVQKMIVSPNGKFLTLFTHDGRIVVVEMETKQIAIDYSCESALPPKQMAWCGMDTVLLY
WDEDLTMVGPLGDPVHYFYDEPVILIPECDGVRILTNTSLEFLQRVPDSTESIFKIGSTS
PAALLYDALDHFDRRSAKADENLRLIRSSLSEAVESCIDAAGHEFDVTRQRALLRAASYG
QAFCSNFQRERVQETCRTLRVLNAVRDPDIGIPLSIQQYKLLTPVVLISRLINAHHHLLA
LRISEYLDMNKEVVIMHWASAKITASPSTPDTHLLEILLDKLQLCRGISYAAVATHADNC
GRRKLAAMLVEHEPRSTKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPPLE
FFAMIQGRVLARDLFVAYSRCYKHEFLKDFFLSTGQIHEVAFLLWKESWDMGKNPMASKG
SPLYGPRIKLIEKARNLFSQAKEHTFESKAAEEHAKLLKIQHELEASTKQAIFVDSSIND
TIRTCIVLGNNRAAIKVKTEFKVSDKRWYWLKAFALATIKDWAALEKFSKEKRPPMGFRP
FVEACIDADEKAEALKYIPKLSDLVERGEAYARIGMAKEAADAAAQANDGGELLERFRKT
FSQNAIFDTLKMPFQGAS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgtgtctgttgctgcggaatggcagcttctctatgatcgatattacaggaag
cctgagatataccaaatgagatggaaacatgtagatttgagccgcaacaaagtggcgtgt
gcctcatttggtgggccaattgcagtcattcgagatgactcgaagattgtccaactatat
gctgaatctgctctaagaaagcttcggatctttaactcagcaggtatacttctctctgag
acgatctggaagcaccccgggggacgcctgattggaatgtcttggtccgatgatcagaca
ctaatttgcattgtccaagatggcaccatttatcgttacaacatccacgctgagctcatc
gagcccaatatgtcaatgggcaaggagtgctttgaacagaatgtggtggagtgtgtcttc
tggggaaatggtgttgtctgcttgacagaaggagggcagttattctgtatctctgatttc
gagatgatgaagccttttaagttgcctgatgtcccggggttaacagaagacgatatgctt
cagccaacttgcttggctgtgagagaacctgagtacacgatgtctgggactgttgaggtg
ttggtagcagttggtgatgaaatttttggtgtggaggaggacagtgtccaaacttttagg
gttgatgagcctagttttaaagactctgagacacagaatgatgattatggaaatttgatt
ggaccggtccagaagatgattgtatcgcctaatggaaaatttctaacactcttcactcat
gatggccggattgttgttgttgaaatggaaacaaaacaaattgctattgactacagttgt
gagtcagcccttcccccaaagcaaatggcatggtgtggaatggataccgtgctgctctat
tgggatgaggatttaacgatggtgggccctttaggagatcctgttcactatttctatgat
gaacctgtaattcttatcccagaatgcgatggagtgagaatattaactaacacgagcctt
gaattcctgcaaagagtacctgattctactgagtcaatctttaagattggaagtacatca
cctgcagctttgctatatgatgctttggatcactttgacaggagaagtgctaaggcagat
gaaaatttgagattaattcgttcatcgctgtctgaggctgttgaatcctgtattgatgct
gctggccatgaatttgacgtgactcgtcagagggctttgttacgagcggcaagctatgga
caagctttttgcagtaattttcagcgtgagcgtgtccaagagacttgtagaactttaagg
gttctaaatgctgttcgtgatcctgatattggcatacctcttagcatacagcagtacaag
ttactgacaccagtagttttgattagtcgccttattaatgctcatcaccacctccttgct
ctgcggatatctgagtacctagatatgaataaagaagtggtgataatgcattgggcaagt
gcaaagataactgcttcaccatcaactccagatactcatcttcttgaaattttacttgat
aagctccaactatgcagaggaatatcttatgctgcagtggcaactcatgctgataactgt
ggccgtcgaaagttagctgcaatgctagttgaacacgaaccacgctccacaaaacaggtt
cctcttttattaagcattggggaggaagacactgctttagtgaaagcaactgagagtggt
gacaccgacctggtttatctggtcatatttcatatatggcaaaagagacctcctttggaa
ttctttgcgatgatccaaggcagagttttggcacgtgatttatttgtagcttattcacgg
tgttacaaacatgaatttctgaaggatttcttcttatctacggggcagattcatgaggta
gcttttcttttatggaaagaatcatgggatatggggaaaaacccaatggctagcaaagga
tccccgctgtacggtccgcgcatcaaactaatagaaaaggccagaaaccttttctctcag
gcaaaggaacacacttttgagtctaaggctgctgaggagcatgcaaaactcttgaagata
caacatgagctagaagctagtacgaagcaggctatttttgttgattcaagcatcaatgat
actatacgcacatgtattgtcctgggtaataatcgtgctgcaataaaagtgaagacagaa
ttcaaggtcagtgataaaagatggtactggcttaaagcatttgctctggctacaatcaaa
gactgggcagcgctcgaaaagttttcaaaagaaaagagaccaccaatggggttccgtcca
tttgtggaagcatgcattgatgcagatgagaaagcagaagctctaaaatacatccccaaa
ttgtcagatcttgtggaaagaggggaggcttacgctcgtattggaatggcaaaggaagca
gctgatgcagcggctcaggcaaatgatggaggagaattgctggagagattcaggaagaca
ttttcacagaatgctatttttgataccttgaaaatgcctttccaaggagcctcctag
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integrated database retrieval system
