Capsella rubella (pink shepherd's-purse): 17888727
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Entry
17888727 CDS
T02984
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17888727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17888727
03012 Translation factors [BR:
crb03012
]
17888727
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17888727
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
17888727
Translation factors [BR:
crb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
17888727
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
HA2_N
Ank_5
nSTAND3
AAA_22
Ank_2
AAA_19
ATPase
NPHP3_N
AAA_7
Rad17
Sigma54_activat
AAA_11
T2SSE
Motif
Other DBs
NCBI-GeneID:
17888727
NCBI-ProteinID:
XP_006295800
UniProt:
R0HX85
LinkDB
All DBs
Position
Unknown
AA seq
1297 aa
AA seq
DB search
MGNKRFRSENAGKPTSVEATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKM
GIQSKSSGRGEQRRLSIFKSGHKSGKSKEANEKSKKEKLKCVSFPPGADAILQELFTHYP
PCDGDTAATSNNKYSGQSGKQGQWKDDFFGKPKISSEEILEKVASLSSRLKKDKALKEIA
KLRSKLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCKIVCT
QPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGSG
SCVSGITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGCP
VVRVPGFTYPVRTLYLEDVLSILKSGGDNHLNSANLSIPDHKLDLTDEDKLALDEAIILA
WTNDEFDALLDLVSSRRSHEIYNYQHQSTWLTPLMVFAGKGRISDVCMLLSFGADWNLKS
KDGMTALELAETENQLEAAQIIREHADNSQSNSQQGQQLLDKYMATINPEQVDVSLILQL
MRKICGDSEDGAILVFLPGWDDINKTRQRLLENPFFADSVKFDIICLHSMVPAGEQKKVF
NRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAK
QREGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDFLQ
KLLDPPVDQSIANALSILQDIGALTPQEELTELGEKFGHLPVHPLISKMLFFAVLVNCLD
PALTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKIAKER
GLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVLAV
GLYPMVGKLCPAFGNNRRTIVETASGAKVRVHSLSNNFNLSSKKYDESLVVFDEITRGDG
GMHIRNCTVARDLPLLLISTEIAVAPTVSSDSDDSDEEEEDEDGEANTNEDGMDIHKEES
RRGAKVMSSPENSVKLVVDRWLPFRTTALEVAQMYILRERLMASILFKVTHPREHLPPHL
GASMHVIACILSYDGHAGLSNPPESMRPKHSRTEMYDSGGWEEKPSSFLNSLFWSLSLKE
NKHPSHTHRNRQQDYNMAQTEAASIPRQQNNKQGNPKSVNNADMGKKKGKMFVNSTNGIN
QPEAASTAKHSKHKSANSSSSGNKKENMPSDQANGNKQPNAPPREVTASMAKNQRSKKTK
TRSGNNSDSGKKKDQYVPKVDVHKRQREDKAEHKGNA
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagagatttaggtctgaaaatgcagggaagccaacttccgtcgaagctact
aggatttgggcgactaaggtcatcgaagactttagagcctccgggaatgaagtttacacg
tttgagcataatctatcaaataacgaacgtggcgtaattcatcagatgtgccggaagatg
ggcattcaatccaaaagttcagggcgtggagaacaaaggcgtctttcgatattcaaaagc
ggacacaaaagtgggaagagtaaagaagccaatgagaaatcaaagaaagagaagctcaaa
tgtgtgtcatttccgccaggggcagatgctattctacaggagttatttactcactatcca
ccttgtgacggagacactgctgccacatcaaataacaagtactccgggcagtcgggtaaa
caaggtcaatggaaagatgattttttcgggaaaccaaaaattagcagtgaagagattcta
gaaaaagtggcatctttgagttctagacttaagaaggataaagctcttaaggagatcgct
aagctgcggtcaaagcttcccatcacatcctttagagacgcaattacatctgcagtggaa
tccaatcaggttattctcatatctggtgaaactggttgcgggaaaactactcaggtgcct
caatatcttttagaccatatgtggtcaagcaaaagagaaacttgcaaaattgtttgcacc
caacctcgtcgaatatctgcgatgtcagtttcggaaagaatatcttgtgaaagaggtgaa
agcattggagaaaacattggttacaaggttcggctccaaagcaaaggtggaaggcactca
tcagttgtattctgcacgaatggtattctcctgagggtgcttgtaggaaaaggctctggt
agctgtgtttccggcataactcacatcattgtggatgaaatccatgaaagggattgctat
tctgatttcatgttggcaattataagggacttgcttccgtcaaatcctcatctccgtctg
attctcatgagtgctactcttgatgctgagagattttcgggatattttggaggctgccca
gttgtccgtgtccctggattcacttatccagtaagaaccttgtatttggaggatgttctc
tctattctgaaatcaggtggagataatcatctaaactctgccaacttaagtatacctgac
cacaagcttgatttgacggatgaagataaacttgctttagatgaagcaatcatcttggct
tggaccaatgacgagtttgatgccctcttagatctagtttcttctagaagaagtcatgag
atctacaattatcagcaccaatcaacctggctaacaccattaatggtgtttgctggaaag
ggtaggatcagtgatgtctgcatgctcctctcatttggtgcagactggaacttaaagtct
aaagatggtatgaccgcattagaattggcagaaacagagaatcaactggaagctgctcaa
ataatcagggagcatgcagacaattcccaatctaattctcagcagggacaacagttactt
gataagtacatggcgacaatcaacccagagcaggttgatgtgagtctgatactgcagtta
atgaggaaaatctgtggtgattcagaagatggtgccattcttgtttttctacctggatgg
gatgatataaataaaacaagacagagattacttgagaaccctttcttcgcagatagtgtc
aaatttgacattatatgtcttcactcgatggtaccagcaggggaacagaagaaagttttt
aatcgcccccctcgaggttgtcgcaaaatcgtgctggcgacaaatattgctgaatcagca
gttactattgatgatgtggtttatgtgatagatagtggccggatgaaggaaaagagctat
gatccttacaataatgtctcaacccttcaatcttcttgggtatcaaaagcaaatgcaaaa
cagcgtgagggtcgagcaggccgctgccaacctggcatttgttatcatctctattctaga
cttcgggcagcctctatgccagattttaaagttcccgaaattaagaggatgcctgtagaa
gaactctgcttacaggttaagatacttgatccaaattgtaaaacaaatgatttccttcag
aaactgttggacccacctgttgatcaaagtattgcaaatgccttaagcatactacaggac
attggggccctgacacctcaggaagagctgacagaacttggagagaaatttggtcatctc
ccagttcatcctctgattagcaaaatgcttttcttcgctgtattggtaaactgtctggat
ccagcacttactctggcatgtgctgccgactacaaggaaccatttacgatgcctatgtcg
ccagttgaaaggcaaaaagctgctgctgcaaaacttgaacttgcgtcactttgtggaggt
gacagtgatcaccttgcagttgttgctgcctttgaatgttggaaaattgccaaagaaaga
ggtctttcggcagagttttgctctcagtactttgtttctcctagtgctatgaagatgttg
gaccaaatgcgtagccaacttgagtcggaacttaaaagacatgggattattcccaacgat
atttcaagctgtagccagaattcgcgtgatcccggtatactccgtgctgttctagccgta
ggattgtatcctatggtgggaaaattgtgcccagcttttggtaacaatcgaagaactata
gtagagactgctagtggtgccaaagtgcgtgtgcattcgctgtcaaacaacttcaatttg
tcgtcgaaaaagtatgatgaatctttggttgtttttgatgagatcacacgtggagatgga
ggcatgcacatcagaaactgcactgttgctcgtgatcttcctttgttacttatctcaaca
gagatagcagtggctcctacagtgagtagtgattctgatgatagtgatgaagaagaagag
gatgaagatggagaagctaatactaatgaagatggaatggacatacataaagaagagagt
agacgtggggcgaaagtgatgtcttcacctgaaaattcagtcaagttggtagttgatcgc
tggttgcctttcagaaccacagcccttgaagttgctcaaatgtacattttgcgggaacga
ctaatggcgtctattctgttcaaggtaacacatccacgggaacatttgccgcctcatctc
ggagcttctatgcatgtgatagcttgtattctctcatatgatggccacgcaggactttca
aatccgccggagtctatgagacctaaacattcgaggactgagatgtatgattccggtgga
tgggaagagaaaccaagctctttcctcaactctctcttttggtctctgagtttgaaagag
aacaagcatcctagtcatactcacaggaatcggcagcaagactacaacatggctcaaaca
gaagctgcatcgatacctaggcagcaaaacaataagcaaggaaaccccaaatcagtcaac
aatgctgatatgggtaagaaaaaagggaaaatgtttgttaattccaccaatgggattaac
caaccagaagctgcttctacagcgaagcattccaagcacaaatcagctaacagttcgagt
tcgggtaacaagaaagagaacatgccttctgatcaagccaatggaaataagcaaccaaac
gcacctccaagagaagttactgcgtcaatggctaagaatcaaagaagtaagaaaaccaag
accaggtcaggcaacaactcagattcaggtaagaagaaagaccaatatgttccaaaggtt
gatgtccataaaaggcagcgcgaagacaaagcagaacataagggaaatgcatga
DBGET
integrated database retrieval system
