Capsella rubella (pink shepherd's-purse): 17888755
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Entry
17888755 CDS
T02984
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03440
Homologous recombination
crb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
17888755
03450 Non-homologous end-joining
17888755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crb03032
]
17888755
03400 DNA repair and recombination proteins [BR:
crb03400
]
17888755
DNA replication proteins [BR:
crb03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
17888755
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
17888755
BRCA1-C complex
17888755
NHEJ (non-homologous end-joining)
MRX complex
17888755
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_15
SbcC_Walker_B
AAA_21
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
17888755
NCBI-ProteinID:
XP_006295998
UniProt:
R0G113
LinkDB
All DBs
Position
Unknown
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVVTFFRPLTLIVGANGAGKTTIIECLKVSCTGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESIAQDQERTESSKG
QMLELETSIQKVDAEVHNMEMMLKDLRKLQDQVSRKTAERSTLFKEQQRQYAALPEENED
TIEELKEWKSKFEERIALLETKIRKMEREMDDTQTTISSLHNAKTNYMLEISKLQTEAEA
HMLLKNERDSTIQNIFSHHNLGNVPSTPFSSDVVLNLTNRIKSRLGELEIDLLDKKKSNE
TALSTAWDCYMDANDRWKSIEAQKRAKDEIKMGVSKRIEEKEIERDSFEYEISTVDVKQT
DEREKQVQLELERKTKQNSEREFEANIEKKQHEIYSMEHKIKTLNRERDVMAGDAEDRVK
LSLRKTEQENLRKKHKKIIDECKDRIRGVLKGRLPPEKDMKKEIDQALRSIEREYSELSL
KSREAEKEVNMLQMKIQEVNNGLFKHNKDTESRKRYIESKLQALKQESVTIDAYPKLLES
AKEIRDEHKRKYNMATGMRQMFEPFEEVARSRHFCPCCERSFTSEEEDSFVKKQRLNASS
SAEHLKMLAVQSSNSDSVFQQLDKLRGIFEEYSKLTNEIIPLAEKTLQEHTEELDQKSQA
LDDVLGISAQIKADKDSIEALVQPLENADRILQEIVSYQKQIEDLEYKLDFRGLGVKTME
EIQSELNSLQSSKDKLHNELEKLRDDQIYMERDISCLQARWHAVREEKAKAANLLRDVTK
AEEDLERLAEEKSQLDLDVKYLTEALGPLAKEKEQLLSNYNDMKVRRNQEYEELAERKRN
YQQEVEALLKASSKINEYHELKKGERLNDILEKQRLSESQLQSNEARKNELAGELNKNKD
LMRNQDQLRRNIEDNLNYRTTKAKVEELTREIESLEEQILNIGGIPAVEAEMVKISRERE
RLLSELNRCRGTVSVYESSISKNRVELKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGAGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALL
RIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgacaaaatgctgatcaagggtatcagaagcttcgacccagaaaataag
aacgtcgttactttcttcagacctttaaccctaatcgttggtgccaacggtgccggcaaa
actacgattatagagtgcttgaaggtatcttgtacaggagagttgccaccaaacgcgagg
tctggccacagctttattcatgaccctaaggttgctggggaaacggagacaaaagcacaa
attaagctgagattcaagacagctgcagggaaggatgtggtgtgtataaggtcatttcag
ttgacacaaaaggcttcaaagatggagtacaaggcaattgagagtgtgctccaaaccatt
aatcctcacactggagagaaagtatgtctcagctacagatgcgctgacatggatagggag
ataccagctttgatgggtgtgtccaaagctattttagaaaacgtcatatttgtgcatcaa
gatgagtctaactggccactgcaagatccttctactttgaaaaagaagtttgatgatatt
ttctcagccaccagatatacaaaggctctggaagttattaagaaacttcacaaggatcaa
gctcaggaaattaaaacttttaagttaaagttggaaaatctgcagaccttgaaagacgca
gcttataagcttcgtgagagcattgctcaagatcaagaaaggacagagtcttcaaaaggt
cagatgttggaactggaaaccagcattcagaaagtcgatgctgaagttcataatatggaa
atgatgttaaaagatctgagaaagctacaggaccaagtatcaagaaaaactgccgaaagg
agcaccttgtttaaggagcagcagagacagtatgcagcattacctgaggaaaatgaagat
accattgaagaattgaaagaatggaaaagcaagtttgaagaaagaattgctcttttagag
accaaaattcgaaaaatggagagagagatggatgacacacaaactaccatttcttcgctt
cacaatgcaaaaactaactatatgctggagatcagcaagctacaaacagaagctgaagct
catatgctgctgaagaatgaaagagattctaccatccagaatatcttttctcatcacaac
ttaggaaatgttcctagtacccccttcagttctgacgtagttttgaatctcacaaatcga
ataaaatcaagactgggtgaacttgagatagacttgcttgataagaagaaatcaaatgaa
actgctctaagtacggcttgggattgctatatggatgctaatgaccgttggaaaagtatc
gaagctcagaaacgagccaaagatgaaatcaagatgggcgtatcaaaacgcatagaagag
aaagaaattgagcgtgattcatttgaatatgaaatttccaccgtggatgttaaacaaact
gatgaaagagagaaacaagtgcaacttgagcttgagagaaagactaaacagaattcagaa
agggaatttgaagccaatatagaaaagaaacagcatgagatatatagcatggagcataaa
attaaaacactgaatcgagaaagggacgttatggctggtgatgctgaggatagagtgaaa
ttgtctttgaggaagacggaacaggagaatcttaggaagaaacacaaaaagataatagat
gagtgcaaggatcgaataagaggggtgctgaaggggagattgccgcccgagaaggatatg
aagaaggaaatagatcaagccctgagatcaattgaaagggaatatagtgagctgagtttg
aaatcccgagaagcagaaaaggaggtcaacatgttgcagatgaagatacaagaagtaaac
aatggtctattcaagcataacaaggatacagaatcaagaaagagatacattgagtccaag
cttcaggctttaaaacaggaatcggttaccattgatgcttatcccaaattgttggagtca
gctaaggagataagagatgaacataaaagaaaatataacatggcaactggtatgcgccag
atgtttgaaccttttgaggaggtagcacgttcacgtcatttttgtccttgctgtgagcgc
tcttttacatctgaagaagaggatagctttgttaagaagcaaaggctaaatgcttcaagc
tcggcggagcatctcaaaatgttagcagtgcagtcttccaattcggactctgtatttcag
cagctggacaaactacgaggaatttttgaagagtactcgaaactaactaatgaaattatt
cctctcgctgagaaaactttgcaagagcatacagaagagctggatcagaagtctcaagct
cttgatgatgtattaggcatctcagcccaaataaaagctgacaaagactcaattgaagca
ctggtgcagcccctggaaaatgctgacaggatcttacaggaaatcgtatcctaccaaaag
caaatagaagatcttgaatataagctcgatttcaggggtcttggggttaaaactatggaa
gaaatccaatcagaattaaatagcctccaaagcagcaaggataaattgcacaatgagctg
gagaaacttagagatgaccagatttacatggaacgtgatatatcatgcctccaggccaga
tggcatgcagtaagggaggagaaggctaaggcagccaatttgttacgtgatgttacaaag
gcagaagaagacctagagcgtttagccgaggagaaaagtcaacttgaccttgacgtgaag
tatttaaccgaggcacttggcccgttggccaaggaaaaggagcagttgctgagtaactac
aatgatatgaaggttagacgtaatcaagagtatgaagaactggctgagagaaagagaaac
taccaacaagaagttgaggcattgctcaaggccagttctaagataaatgagtatcatgaa
ctgaagaaaggagagcgcctaaatgatattctagaaaagcagcggttatctgaatctcag
cttcagagcaatgaagctagaaagaatgaacttgcaggtgaactgaacaaaaataaagac
ttgatgcggaatcaagatcaactgagaagaaatatagaggataacttgaactaccgaaca
acaaaagcaaaagttgaggagcttacacgtgaaattgaatcattggaagagcaaatattg
aatattggtgggattcccgcagttgaagcggaaatggtaaagatatcacgggaaagagaa
agacttctttcagagctgaaccgatgtcgtggaacagtgtctgtttacgagagcagtatt
tcaaaaaacagagtggagctaaaacaggcacaatacaaggacatagataagcggcacttt
gatcaactgatccaactaaagacaactgaaatggcaaataaagacttggatagatactac
aatgcccttgacaaagcactaatgcggttccacacaatgaaaatggaggaaattaataag
attataagggaactgtggcagcagacatacagaggtcaagatatggattacatacgaata
cactcggattccgaaggtgcaggcacccgctcttacagctacaaggttcttatgcagact
ggtgatacagaacttgaaatgagaggaagatgcagcgcaggtcaaaaggttcttgcttca
ttgattattaggttggctttagcagagacattttgcttaaactgtggaatattagccctt
gacgagccaactacaaacctggatgggcccaattcagaatctcttgcaggagctcttctt
aggatcatggaagacagaaagggccaagagaatttccagctcatagtcattacccatgat
gaacgctttgctcaaatgattggccagcggcaacatgctgaaaaatattaccgggtcgca
aaagatgatatgcagcacagcataatcgaggctcaagagatctttgattga
DBGET
integrated database retrieval system
