Capsella rubella (pink shepherd's-purse): 17888855
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Entry
17888855 CDS
T02984
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17888855
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
17888855
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17888855
NCBI-ProteinID:
XP_006295652
UniProt:
R0HT54
LinkDB
All DBs
Position
Unknown
AA seq
386 aa
AA seq
DB search
MASLLVISVFFFFSISSCSAQSYNVLSFGAKPDGKTDATKAFMAVWETACASSRPVTIVV
PKGRFLLRSLNFDGSKCKPKPVIFRIDGTLVAPADYQVIGNEDYWIFFQHLDSVTVYGGV
LDARGASLWGCKKSGKKCPSGATTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQG
VKVLAAGNSPNTDGIHVQSSSTVSIMNTKISTGDDCVSIGPGTNGLWIENVACGPGHGIS
IGSLGKDSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKDIRFQHCVMNNVENPI
IIDQNYCPDHNCPVQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLT
YQNKPAASACTHAGGIEAGFFQPNCL
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacttcttgtcatctccgtcttctttttcttctccatctcttcttgttctgct
caatcctacaatgtcttgtccttcggagctaaaccggacggaaagacagacgcaaccaaa
gcgttcatggcggtttgggaaaccgcttgtgcatcgtctcgtcccgttaccattgttgtt
cccaaaggccggttcttgttaagaagccttaatttcgacggttcaaagtgcaaaccgaaa
cccgttatattccgtatcgacggtacattggtggctccggctgattatcaagtcatcgga
aatgaagactattggatattctttcagcatctcgacagcgtcaccgtatacggcggagtt
cttgacgctagaggagcttctttatggggttgtaaaaaatccggcaagaaatgccccagc
ggtgcaacgaccataggatttcagagctcaagcaacgttgtggtctccgggctcacgtca
ctcaacagccagatgttccacgtcgtcatcaacggttgcaacaacgtgaagctacaagga
gtcaaagtactagcagccggaaacagccccaacacggacggtatccacgttcagtcttcc
tccaccgtctctatcatgaatactaaaatctccactggcgacgactgtgtctccatcggt
cccggcactaacggactatggatcgaaaatgtcgcctgcggccctggtcatggcatcagc
attggtagtttgggaaaagatagcgtggagtcaggtgtacagaacgtgacggttaaaacg
gtgacgtttaccggaacagataacggagtgaggataaaatcatgggccaggcccagtagt
ggattcgccaaggacatccgtttccaacattgtgtaatgaacaacgtagagaaccctatc
atcattgaccaaaactactgtcctgatcacaattgtcctgtccaggtttcggggatcaaa
atcagcgatgtgttgtttgtagatatacatggaacatcggcgacagaagttggagtgaaa
ctcgattgcagttctaagaaaccgtgtaccggaatacggcttgaggacgttaagttaacg
tatcagaataaaccggccgcttcggcttgtactcacgccggagggatagaagctggattt
tttcagccaaactgtctatga
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