Capsella rubella (pink shepherd's-purse): 17889219
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Entry
17889219 CDS
T02984
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crb03016
]
17889219
Enzymes [BR:
crb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
17889219
Transfer RNA biogenesis [BR:
crb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
17889219
Prokaryotic type
17889219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
17889219
NCBI-ProteinID:
XP_006294040
UniProt:
R0HSD1
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MAVSFLRIPIPSRVFWYPTRLTRATPALVRFSSSAATLQPSSTSLSPSSSDHFLADKWES
YRKKKVVIRIGYVGTDYRGLQIQRDDPAIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWA
RSSRTDKGVHSLATSISLKMEIPETAWKDDPQGIVLAKCISKHLPENIRVFSVLPSNRRF
DPRRECTLRKYSYLLPVDVIGIKSNFTSDEIDYHITDFNEILKEFEGEYPFHNYTQRSRY
RRKSEQKLKQRNGRPPKEPKSVKASETEFAEENHREIEEEEEEEKEVDGESDEHFSDNSQ
VNTRAKWLYEPDETDKLSGAHFRKVFRCRSGKLESSLGFRFVEISIWGESFMLHQIRKMI
GTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVLILRGNSFEVRRFPQRQVVEAPGES
EEVEKEIEEFYRAVMVPQVSRFLDSEKAPWAEWLEHLDRNDGLIDEELKDVRRGWEEWKA
VKPWMAKKKSEDDDEELSSVPVAVHQAL
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctcgtttctacggattccaattccttcgcgggtcttctggtatccgacccgg
cttactcgggccacaccagctttggtacgattctcttcttccgccgccacattacagccg
tcttctacttcgttatcaccatcttcttccgaccactttctcgccgataaatgggaatca
tatcggaagaagaaggtggttattcgaattggatacgttggtactgattacagaggtttg
cagattcaaagagacgaccctgctatcaaaactattgagggtgaattggaagttgctata
tacaaggcaggtgggattagagatagtaactatggtgatcttcataagattggttgggct
agaagtagtcgaactgataaaggagttcattctttggcaacgtcaatatcgttgaaaatg
gagatccctgagacagcgtggaaggatgatcctcagggcattgttcttgctaaatgcatt
agcaaacaccttcctgagaatatcagagttttcagtgtgttaccatcgaataggagattt
gatccccgaagagagtgtacgcttcggaagtattcttacctccttcctgttgatgttatc
gggatcaaaagtaactttacttcagatgagattgactatcacattactgatttcaatgaa
attttaaaagaatttgagggtgaatatcctttccataactatacacagcggtcacggtac
agaagaaagtcggaacaaaagttaaaacaaagaaacggacgccctccaaaagaaccaaaa
tcagtcaaagcatcagaaacagagtttgcagaggaaaaccacagagaaattgaagaagaa
gaggaagaggaaaaggaagttgatggtgaatctgatgaacatttttctgataattctcag
gtgaacactcgtgcaaaatggttgtatgagccagatgagacagataagctgagcggtgct
catttcagaaaagtgtttcgatgtcgaagtggaaagctggagagttcacttggattcaga
tttgtcgagatctccatatggggagaatcatttatgttacatcagatacggaaaatgatt
ggaacggctgtggcagtgaagagagagctgcttcctagggacatcataagactatcactg
aacaagttcacaagaatcgttttgcctcttgctccatctgaagtactgatcctaagagga
aacagtttcgaagtgcgtagatttcctcagaggcaggtggtggaagcaccgggtgaatca
gaagaagtggagaaagaaatagaggagttttacagagcagtgatggttccacaggtgagc
agattcttagattctgagaaagctccatgggcagagtggctggagcatttggataggaac
gatggtttgatagacgaggaattgaaagatgtaagaagaggctgggaggagtggaaagcc
gtgaaaccatggatggcgaagaagaagagtgaagatgatgatgaagagttgagttctgtt
ccagtagctgttcatcaagctctatga
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