Capsella rubella (pink shepherd's-purse): 17889449
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Entry
17889449 CDS
T02984
Name
(RefSeq) uncharacterized protein LOC17889449 isoform X3
KO
K24155
rabconnectin-3a
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
17889449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crb04131
]
17889449
Membrane trafficking [BR:
crb04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
17889449
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
17889449
RAVE complex
17889449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
17889449
NCBI-ProteinID:
XP_006293548
UniProt:
R0FV57
LinkDB
All DBs
Position
Unknown
AA seq
2359 aa
AA seq
DB search
MNAILVQETNVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSGDHLQDLVSSTWS
FEGPFATATSCSKFPAECDEAGKSVLAFYSDGVSYHKLELPHPQRISMIQWRPMAAEQSA
IGIANSMRNVLMTCCLDGAVRLWSEVDGGKTKKGAKDVSDHKKSFCVAAVIEINQVLDGC
LGRDLFIFWGTRTGGILKTIEGTNQFFSMENYDQEIVGKCEWLVGYGPGKLATLWAVHCL
DDISPIRFPRVTLWARQESNEIGSGSLSLADAAGSSDRLPLKKVSLLRNNLFGTPLICSS
IYLSPENTVYWSSLHTIKSHDSENSSPNKSSLLKCITGKVLYLDGHGGKILQVAFDPFKC
EVGYTASLDSNGLIIIWSSSAYLNRAIDHPISVSSWKPCGRLQKQDLRFKYTCLCWAPSS
LKDERFLLVGHVGGVDCFSVRNCGKDDDGYLTHYICTIPFAVKSPLQSGPTSIFARALSN
SCGKTFKSNRFLLMSVSMKEKRFDALSWSVTLHHFDAAGSTCDCHFHDFDCTGLGKWLFK
DTFAGKTNCIAIRSCSSEIPESHRDDEVTSFAVVNPSGRALENDVNSENKDYTMATGLAD
GSLKLWRSSFQESSTPSLSWELVGMLTIGQNPVSAISLTDAGHKIAAVCTENHSKAACAI
SIWEIIHLIDSGVFILEHTLHLDAEVVAVKWSSTGNDQLLLGVCTQKEMRVYGTPRQPCK
STSFAVADYSLEAQIWQCFAVTRTFSVFRDLWWGSKAMTCLVHNDFISLHGQWLAVVDEK
QRIDNLPHIFAANLPNLVTATKEGRDSKLLSDSGTNDIKEADTASISRGCIPLPSTSNAI
DDRQVTSMSLIGTAYGSDTSTDITSMERMVDKLGGALPLYHPQALLVAIHSGNWKRASTA
LRHLAECITSTDASEKGALKSVLCPDVLLSMYYEGSLSNDRNPKDFQWGGTSGSQLQSGL
QSSGFFNMDSYNPNSSYSSPATDLDFSGFCEQLKKLSDGGNISRIEKLQYFAIVDLLCEI
SNPHSTSVYASLDEAGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESKE
ILSGSLLPNESSWQQMRSLGFGFWYSNVAQLRSRMEKLARQQYLKKKNPKDCALLYIALN
RVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLG
GEASSAINVCVKNLQDEQLALVICRLVDGQGGALESNLIKKYILPSAVQRGDFWLLSLLQ
WELGEYHQSILAMAGCLGNSVTGSSTVSANHISFVDPSIGLYCLMLATKNSVKNTLGERS
ASTISRWATLMAANAFSRCGLPLEALECLSASGVGRGGTHQTSVPSNGQLCTPQGVFEHC
VPHSSNWVSSGVSSTLDTHFKLGLAVQFLSRLLWVATAPLMNSDTVSCEKLSRFQHTLQT
ALEQFYLRFSLSSSYLRDMVILSAYSRGLLSMGHNIFQENSSSGLSDDKSHIDENLLQYS
ALPKLVLKAIEEKSSVLSRIIAACSVTCLHSVPCFEENKVSPGPEPKWSNALRLYFQGIL
ESFSSLRTSISLCLGSSVEDLETRLAVVLDLVEYCSRLAIAWVLGDVNCLFRMVQPLTIA
YFHGQMPHEVDLESVKRVYHQEASVSVLDASDVEVNSKVSRDVENNEFGYPVDSIPEDER
RLITQACFWKHVSDFVKHKLVSISINLDGVISNSCSSENFGAQAALDSSADIVFVTEKIM
SVLGNTLISTLAQLSSYHVKQLVLVLKQKIEKRTQVPTLLWLLECGRSQAKFLNRDPPDA
GIENEDNGDLAVSVRFWKLCVDPHLLYEAILLENFDISEWSKSKPLDDWSDMYRELTRKN
ELNMLCNQDGRSSNEVASLASYSSNSSQKAAVTASDNSAFQNPKEIHKRTGELIEALCIN
AINHRQAALASNRKGIIFFKLEDGGSCINQSDYIWSNADWPHNGWANSESTPVPTYVSLG
VGLGDKKGAHLGLGGATVGVVSLSKPGKSHRVPGYTGLGVSGLGWETQEDFEQFVDPPPT
VETVVTRAFSSHPTLPLFLVGSSNTHIYLWEFEKERATATYGVLPAANVPPPYALASISA
VQFGPCGHRFASAALDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVEYISSSGSIVAA
SGYSSSGANVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGD
VGLHDFRYIATGKMKKQRNPDGRSSTDGDQHKNGMLWYIPKAHLGSVTKISTIPHTSLFL
TGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFITC
GGDGTVKLVSLRDSYDDGK
NT seq
7080 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccatattggtgcaagaaacaaatgttgaggccattgagtggacaggatccggg
gatgggatcatagttggtggaactgatattgtcttgtggaagagaaggaaccaatcttgg
gaaatagcttggaagttctcgggggatcaccttcaagatctggtttcctccacctggtcg
tttgagggtccttttgcgacagcaacttcttgtagcaagtttccagctgagtgtgacgag
gcaggtaaaagtgtcttggccttttatagtgacggagtatcatatcataaacttgaattg
cctcatcctcagagaatatccatgatccagtggagaccgatggctgcagaacagtctgca
ataggtatagcgaactcaatgaggaatgtgctaatgacatgttgcttggatggggcagta
aggttatggagtgaggtagatggtggaaagacaaaaaagggcgctaaagatgtgtctgat
cataagaaatcattttgcgtggcagctgtgatagagataaatcaggtcttggatggctgt
ttgggcagagatttatttattttttggggaactcgtacagggggtatattgaaaaccatt
gaaggtactaatcaatttttttctatggaaaattatgatcaagagatagttggaaaatgt
gagtggttggtggggtacggccctggaaagttggctactctgtgggctgtccattgtctt
gatgacatctctcctataaggtttccccgagtaacattgtgggcgagacaagaatcaaat
gaaattggttcaggatcactctctctagcggatgctgctggttcttctgatcgattaccc
cttaagaaagtttctctattgagaaataacctttttggcacaccactaatatgctcgtcg
atttatctatctccggagaatactgtgtattggtcttccttgcacacaataaaatcacat
gactcagaaaattcatcccctaataaatccagtttattgaagtgcattactggaaaagta
ttatatctcgatggtcatggtgggaaaatcctacaggttgcctttgatcctttcaaatgt
gaggtgggatacactgcttccctggattctaatggtttgataataatatggtcttctagt
gcttatttgaaccgtgccattgaccatcctatatcagtttcctcttggaaaccttgtgga
cggctacagaaacaagatttaagatttaagtatacatgtttatgctgggcaccttcgtca
ttgaaagatgagagatttctacttgtgggacatgtaggaggggttgattgctttagtgta
agaaattgtgggaaagatgatgatggttatctaacccattacatatgtaccataccgttt
gcagtaaagagccctttgcagagtggtccgaccagcatatttgcgagagctctgtctaat
tcttgtgggaagacattcaaaagtaacaggtttttgctgatgagtgtatcgatgaaagag
aaacggtttgatgctctgtcatggagcgtgaccttgcatcattttgatgcagcaggaagc
acctgcgattgtcattttcatgattttgattgtactggactgggaaagtggttattcaaa
gatacttttgctggtaagacgaattgcattgctattagatcatgctcttcagaaatacct
gaatctcaccgtgatgatgaagttacgagttttgctgtggtcaatccaagtggtagggct
ctagagaatgacgtgaacagcgaaaataaagattatactatggcaactggtctagctgat
ggctctttaaaactttggagaagtagttttcaggaaagttcaacaccttccctttcgtgg
gagcttgttggcatgcttaccattggccaaaatcctgtcagtgctatatctctaactgat
gcgggacacaagatagcagccgtctgtacagagaatcattccaaagctgcctgcgcaatt
agtatatgggagattatacaccttatagattcaggggttttcatactagagcatacgtta
catttggatgcagaggttgttgcagtaaaatggtcatctacgggtaatgatcagctattg
cttggagtttgcacacaaaaggagatgcgggtgtatggtactcctcggcagccttgcaaa
agtaccagttttgcggtcgctgattattctttagaggcacagatttggcaatgcttcgct
gttactcgtacattttctgtttttcgcgatttatggtggggatctaaagccatgacttgc
cttgttcataatgattttattagtctacatggtcaatggctggctgttgttgatgagaaa
caaaggatagataacctaccacacatatttgcagccaatcttcccaacttagtaactgct
acaaaagaaggtagagactctaaattgttatctgattctggtactaatgatatcaaagaa
gctgatactgcatctattagcagaggatgtattcctctaccttcaactagtaatgcaatt
gatgacaggcaagtcactagtatgtcgttgattggaaccgcatatggttcagatactagt
actgacattacgagcatggaacgcatggtggataagttaggaggtgccttaccgctttat
cacccacaagccctccttgtagctatacattcaggcaattggaaacgagcaagcacagct
ctaaggcatcttgctgaatgtatcacttcaactgatgcctccgagaagggtgctttaaag
tctgttctttgtccagatgtccttttgtcaatgtattatgaagggtctctttccaatgac
cgaaatcctaaggatttccaatggggtgggacatctggttcacagttgcagtcagggttg
cagtcatctggtttctttaatatggattcttataatcccaacagtagttacagttcacct
gcaacagacttggattttagtggcttctgtgagcagctgaagaagttatcagatggtgga
aatatttcaaggatagaaaaattgcaatattttgcaattgttgaccttctttgtgaaatt
agtaacccacattctacatctgtctatgcaagtcttgatgaagctggcagaagattttgg
gtcacacttaggtttaaacagctattcttggctcgaagttctgggaaaacagcatctttg
gaagagttggatattgactctagcatgataggatgggcttttcactcagagtctaaagag
attttatctggttctcttttacctaatgaatcatcatggcaacaaatgcgatcactggga
tttggattttggtattcaaatgtagcacaactgcgttcacgaatggagaaactggcccga
cagcaatacttgaagaaaaagaatcctaaagattgtgcgcttctctatatagctttaaat
agagttcaagttttggctggtcttttcaaattaagcaaggatgagaaagataaacccttg
gttgtttttctttcacgcaattttcaggaggagaaaaacaaggcagcagccttgaaaaat
gcgtatgtgctaatgggtaaacaccaactggagctggcgataggtttctttctccttgga
ggtgaagcctcatctgccataaatgtttgtgtgaaaaatcttcaggatgagcagcttgcg
ctcgtaatttgccggcttgttgatggtcaaggtggggccctggaaagtaatcttataaag
aaatatatacttccatctgctgttcagagaggagacttttggctattaagccttcttcag
tgggaattaggagagtaccaccagtcgattcttgctatggctggatgtctagggaactct
gttactgggagttctaccgtttctgcaaatcacatctcttttgtggatcctagtattggc
ctatactgcctcatgttggcaaccaaaaatagtgtgaagaacacactgggggaaagaagt
gcttcaacaattagtagatgggcaaccttaatggctgctaacgctttcagcagatgtggc
ctcccgctcgaggcgttggaatgtctttcagcatctggcgttggtcgtggtggtacccat
cagacaagcgttccaagtaacggtcagctgtgtaccccgcaaggtgtttttgagcattgt
gtccctcattcgtcgaattgggtatcaagcggtgtttcatctactttggacactcatttt
aaattgggtttagccgttcagttcctctcgaggctcttatgggtagcaactgcaccgtta
atgaattctgatactgtttcgtgtgagaaactctcacgatttcagcatactctacaaaca
gctttggagcaattttacctgaggttttcgctgtcttcatcttacctacgtgatatggtt
attttgtcagcctacagccgtgggttactatccatgggacacaatatatttcaggaaaat
agttcctcaggactctcagacgacaagtctcacatagatgaaaatcttctccaatattca
gctttaccaaaattggttctaaaagcgattgaagagaaatcatctgtattatcacgtatc
attgctgcgtgcagtgtcacttgcttacactcagtgccatgctttgaggaaaataaggtg
tcacctggacctgaaccaaagtggtccaatgctttgcgtctttactttcagggaattttg
gaatcgttctctagtttgagaacatctattagcctgtgcttgggctcctctgtggaagac
ttggaaacaagactcgcagttgttcttgatttagtcgaatattgttcgagactcgcaata
gcttgggttttgggggatgtaaattgtctcttcagaatggttcagccccttaccatagca
tattttcatgggcagatgcctcatgaggttgacctggaaagcgtgaagagagtataccac
caggaagcctctgttagtgttctagatgcatcagatgtagaagttaattctaaggtcagc
agagatgttgaaaataacgaatttggctatccagtggactcaattccagaagatgaaaga
cgtcttataacgcaagcatgcttttggaagcatgtttcagactttgtgaaacataagctg
gtatctatttcgatcaatctagatggtgttatctcgaatagctgttcctctgagaatttt
ggtgctcaggcagcattggactccagtgctgacattgtattcgtaacagagaagataatg
tctgttctgggaaatacactgattagcactcttgcccaactctcttcctatcatgtcaaa
caactagtattggtcttgaaacagaaaatagagaagagaactcaggttcctaccttgtta
tggttacttgaatgtggcagatctcaagcaaagtttcttaatcgagatcccccagatgca
ggtatagagaatgaagacaatggtgacctagctgtttctgtgaggttctggaagctttgt
gttgatcctcatttactgtacgaggctatcttgctagaaaattttgacatatctgagtgg
tcaaaatccaaaccactggatgattggagcgatatgtacagagaacttaccaggaagaat
gagctcaatatgttgtgcaatcaagatggtcggagtagtaatgaagtggcttcgcttgca
agctactcttcaaattcttcacagaaagctgcggtaactgccagtgataactctgctttc
cagaatcccaaagaaatccataagaggaccggggagcttatagaggccctttgtatcaat
gccatcaaccatcggcaagctgcattagctagcaaccgcaagggcataattttctttaag
ctagaagatggtggttcctgcataaaccagtcagactatatctggtcaaatgctgactgg
ccacataatggttgggctaactctgagtcaactccggttccaacatatgtctctcttggt
gttggtcttggggacaagaaaggagcacaccttgggttagggggggccactgttggagtt
gtttctctttccaagcctggtaaatctcacagagttccgggttacaccggcttaggagtc
tctggtctaggttgggaaactcaagaggactttgaacagtttgttgatcctcctccaaca
gttgaaactgttgttacgagagcattctctagtcacccaacattgcctctcttcttggtt
ggctcgagcaacacacacatttacttgtgggagtttgaaaaagagagagccactgcaact
tacggtgttctgcctgctgcaaatgttcctcctccatatgctttggcgtctatatcagca
gtgcaattcggtccatgcggacacagatttgctagcgctgcactggatggaactgtatgc
acttggcaatcagaagttggaggaagaagcaatatccatcctgttgaatcatctctttgc
ttcaatggccatgcatcagatgtagaatatattagttcgagtggatccattgttgcagct
tcaggatatagctcaagtggtgcgaacgtagttgtatgggatactctagctccgccttca
acctcccaggcatctatcaattgtcatgaaggtggtgcgcgctctatctcagtattcgat
aatgacattggtagtggctcaatttcacctatgattgtgactggtggcaaaaacggggat
gttggtttgcacgatttccggtatattgctaccggaaagatgaagaagcaaaggaaccct
gacggaagatcttcaactgatggggatcaacacaagaatgggatgctttggtatatacca
aaggctcacttagggagcgtgacgaaaatatcaacaatcccgcacacaagtctgttcttg
acaggaagcaaagacggagaagttaaactttgggatgcgaaagcagccaagttgatacat
cattggcccaaattacacgaaagacatacatttctacagccgaactctagaggctacggt
ggaatcatccgggctggggtgactgacatacaagtttgtccgaacggatttataacgtgt
ggcggtgatggcacggtgaagttggtcagcctcagagactcctatgacgatggtaaataa
DBGET
integrated database retrieval system
