Capsella rubella (pink shepherd's-purse): 17890058
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Entry
17890058 CDS
T02984
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17890058
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
17890058
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Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
LSM_int_assoc
NosD
Motif
Other DBs
NCBI-GeneID:
17890058
NCBI-ProteinID:
XP_006295779
UniProt:
R0FZW2
LinkDB
All DBs
Position
Unknown
AA seq
394 aa
AA seq
DB search
MANNTSFPCAIILLFCVSIFLTNSSHAMQSFNVQRYGARGDGRTDATKPFLTAWSLACGS
RAQSMVYIPRGTYLVGNIVFWGPCKNIITFKVDGTLVAPANYWSIGNSGYWILFAKVNRI
LVYGGTIDAKGAAYWSCRKKGGYCPQGARSLSFSWCNNVLLSGLTSFNSQNIHITVHHSS
NVRIQNIRIRAPSGSPNTDGIIVQSSSGVTISGATIGTGDDCIALNQGAKNVWIERVSCG
PGHGISIGSLGDYANEEGVQNVTVTSSVFTKTQNGVRIKTWAKPSTGFVRNVEFRNLVMR
NVENPVIIDQNYCPNRNGCSRQGSGIKISGVTYANIKGTSTTPISMKLDCSGSNPCTGLM
LRNINLTYLRRSSASYCRNAHGRSSGVLVPRNCM
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggccaataacacctcttttccttgtgccatcatattattattctgtgtttccatcttt
cttaccaactcatcgcacgcaatgcaatcgtttaatgtacaaagatatggagctagaggc
gatgggagaacagacgcgaccaaaccatttttgacggcttggtcattagcatgcggctca
cgggctcaatcaatggtctacattccccgtggaacgtacttggttggaaacatagtcttt
tggggtccttgcaagaacattataactttcaaagtcgatggaacactcgtggctcccgca
aactattggagtataggtaattccggttattggattctctttgctaaagtaaaccggatc
ttggtttacggtggcaccattgatgctaaaggagctgcttattggtcttgtagaaagaaa
ggtggttattgtcctcaaggtgcaaggtctttatcattcagctggtgcaacaatgttcta
ttaagtgggttaacgtcatttaatagccagaatatacacatcacagttcatcattcttct
aatgttcggattcaaaacataagaataagggctccaagtggaagtcctaacaccgacggc
atcatagtccagtcttcttcaggagtcaccataagtggtgcaacaatagggactggtgat
gactgcattgctcttaatcaaggagctaagaatgtttggatcgaacgtgtgagctgtgga
cccggacatggaatcagcattgggagtcttggggactacgctaatgaggaaggtgtgcag
aatgtaaccgtcacgagctctgttttcaccaagacgcaaaatggagtaagaataaagact
tgggctaagccgagcacagggtttgtaaggaatgtggaatttcgaaatttggtaatgagg
aatgtagaaaatccagtgatcatcgatcaaaactattgccctaatagaaacggttgctct
cgtcagggctctggaataaagataagtggagtgacttatgcaaacataaaagggacatca
acaacacccatatcaatgaaattggattgtagtgggagcaatccatgcacagggcttatg
ttacgaaacattaatcttacttacctgagaagatcgtcagcttcttattgtaggaatgcg
catggacgatcctctggagttttggttccaaggaattgtatgtga
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