Capsella rubella (pink shepherd's-purse): 17890170
Help
Entry
17890170 CDS
T02984
Name
(RefSeq) uncharacterized protein LOC17890170
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17890170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crb03000
]
17890170
03019 Messenger RNA biogenesis [BR:
crb03019
]
17890170
04121 Ubiquitin system [BR:
crb04121
]
17890170
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
17890170
Transcription factors [BR:
crb03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
17890170
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17890170
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17890170
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
17890170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-RING_2
Nup35_RRM_2
Rtf2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
17890170
NCBI-ProteinID:
XP_006293444
UniProt:
R0FTX4
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MNEKGEKTCPLCAEEMDLTDQHLKPCKCGYQICVWCWHQIIEMAEKDKTEGRCPACRTPY
DKEKIVGMTVSCERLVAEINNDRKKSQKVKAKPSEGRKDLTGVRVIQRNLVYVMSLPFDL
ADEDLFQRREYFGQYGKVVKVAMSRTAAGTVQQFPNNTCSVYITYSKEDEAIRCIRSVHG
FILDGRNLKACFGTMKYCHAWLRNMPCTNSDCLYLHEFGSPEDSFTKDETISVHMRRMVQ
EITGWRDNYIRRSGSMLPPPVDDFVDNESSTRKIPKVVLNNAHTVAKSSPPNDSNSQSVT
LPAGALWGMHSSSQSSVPSSPCPREPLREKSATVSSAVGTNPTQMSSSHSHELKKAALKD
NRSADGNALKPQNLLDGQTDFPELSLSNRTQVTNSREVISASVDNSRAISEPSDCTDLPE
HTSQPCKSKLSNGNKMINRKIESVCSDAVSVDADSVVDGYHGRTRSDSSHFNHASVKSSH
TEMSQDHIQRSVNEPREVQALRKSGRADANEVVVLRAEANAYTALTSPLVTDRYPEAEDD
ISLFNRQRLKDPEVLSCQPNGLLRTLNSMQPCSSQYKAEHDETRTVGGSSESRGSNVAPI
SHGYTEMPLSEPSHLNGSLDHSIMFPDKARDTQPIGKCFADSEENSRSEMDERIIANIMS
LDLDEYLTSPQNFANLYGESDEEARSRKLANSSKMEDSQSRFSFARQDESKDQAFASYNT
FNQIAPGSDLYQNSSERQSGNMGMFGTYNGLSSGYSSGYLKGVDYVTQRSTLPSSYNPTS
APRCPVSAPPGFSVPSRPPPPGFSSNGREHQIFDGVSGNHRFSDTTSFGNPYQQSLPVEN
VRDVQFMDPAILAVGQGFENASLDFRSNFQGNTNMFGNAAKLQQHQQAVMQTPLSTHQNC
RFTDSLGIASRLIDQSQGNNILSRNLALPNGHWDGLMSNEIQTRNRLQNEKLVGTTNWIP
GYNGTFRI
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagaaaggagaaaagacttgtcctctctgtgctgaggagatggacttgactgat
caacatcttaaaccttgcaaatgtggctatcagatatgtgtttggtgttggcatcaaatt
atagagatggctgagaaagataagacagagggtcgctgtcctgcatgtcgtaccccttat
gataaagaaaagattgttgggatgacagtcagctgtgaaaggttggttgctgaaattaac
aatgaccggaaaaagtcacagaaggtgaaggctaaaccttcagagggaaggaaagatctg
actggtgtgagagttatccagagaaatttggtttacgttatgagcttgccttttgatctg
gcagatgaagatctttttcagcgaagagagtactttggtcaatatggaaaagtcgttaaa
gtagcaatgtctcggactgcagctgggactgtccaacaatttccaaacaatacttgcagt
gtatatattacttactccaaagaggatgaagcaattcgatgtatccgatcagtacatgga
tttattttggatggtagaaatttgaaggcatgttttgggaccatgaagtattgtcatgca
tggttgagaaacatgccttgcaccaattctgattgcctttatttgcatgagtttggttcc
ccagaggatagtttcacaaaagatgagaccatatcagtgcacatgaggagaatggttcaa
gaaattactggttggagggataattatatacggcgctctgggagcatgttacctccacca
gttgatgattttgttgataatgaatctagcacaagaaaaattccaaaagttgttttgaat
aatgcacatactgtcgctaaaagttctcctccaaatgacagcaacagtcagtctgttacc
cttcctgccggagcattgtggggaatgcattcttctagtcaatcatcggtaccgagttca
ccatgtcctagggaacccttaagagagaaatctgcaacagtgtcatctgcagttggaaca
aatcccacacagatgtcttcatctcacagtcatgaattaaagaaggcagcattaaaggat
aaccgtagtgcagatggaaatgctttgaaacctcaaaacctattggatggtcaaactgat
tttcctgagctttccttgtctaataggacccaggtcactaatagtagggaagtaatctct
gccagtgtggataatagtagagctattagtgagccatcagattgcacggatttgccagaa
catacttctcagccttgtaaatccaagctgtctaatggaaacaaaatgattaacagaaaa
atagagagtgtatgcagcgatgctgtgtcagtggatgcagatagtgttgtggatggctat
catggaagaacaagatctgacagttcacattttaatcatgcttccgtaaagtcatcacat
acagaaatgtcccaagaccatatacagcgtagtgtcaatgagcctagagaagttcaggca
ctgcggaagtctggtagagctgatgcaaatgaggttgttgtcttaagagccgaagctaat
gcatatactgctttgacgtctccgttggtaacagatcgttatccagaagctgaggatgat
atatcattgttcaatagacaaagactcaaggatccagaagttcttagctgccagcccaat
ggtttactacgtacgttaaattctatgcagccttgttcatcccagtataaggctgagcat
gatgaaaccaggactgtgggtggatcttctgaaagcagaggaagtaatgtagcacccatc
tcacatggatataccgagatgccacttagtgagcccagtcatttaaacggcagtcttgac
cattctattatgtttcctgacaaagcaagggacacacagccaattggaaagtgttttgct
gactcagaagaaaattctaggagtgaaatggatgaaaggataattgcaaatataatgtct
ttagatcttgatgaatacttaacttcacctcagaactttgcaaatctatatggggaaagt
gatgaagaggccagatctcgtaagctagcaaattccagtaaaatggaggatagtcaatcc
cggttttcttttgcgaggcaagatgaatcaaaggatcaagcttttgcttcttataacacc
ttcaaccagatagcacctggcagtgacttataccagaactcttcagaacgacagagtggt
aatatgggtatgtttgggacgtataatggtctttcatccggttattcatccggctatctc
aagggagtagattatgtcacacaaaggtctactctgccctcatcctataaccctacttct
gctccaagatgtccggtttcagcaccacctggattttcagttccaagtcgacctcctcct
ccaggcttctcctcaaatgggagagaacatcagatttttgatggtgtttcaggaaatcat
cggttttctgatacaacatcattcggtaatccatatcagcagtcactcccagttgaaaat
gtcagggatgttcaatttatggatcctgctattttggccgtgggtcaaggctttgagaat
gcaagcctagatttcagatcaaactttcaaggaaacacaaacatgtttggaaacgcggca
aagctccaacaacaccaacaagcggtaatgcagactccattatctacacatcaaaactgt
agattcactgattctctgggaattgcatcaaggcttatagatcaatctcaaggcaataac
atactgtctagaaacctcgcgttgcctaatggtcactgggatgggttgatgagtaacgag
atccaaactcgaaacagactccaaaacgagaaacttgttgggacaacaaactggatcccg
ggttacaacgggacattcaggatttaa
DBGET
integrated database retrieval system
