Capsella rubella (pink shepherd's-purse): 17890360
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Entry
17890360 CDS
T02984
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
crb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17890360
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
17890360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17890360
04121 Ubiquitin system [BR:
crb04121
]
17890360
03400 DNA repair and recombination proteins [BR:
crb03400
]
17890360
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
17890360
Spliceosome [BR:
crb03041
]
Complex B
Other components
Prp19 complex
17890360
Complex C
Prp19-CDC5 complex
17890360
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
U-box type E3
17890360
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
17890360
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF12
WDR90_beta-prop_4th
PEP5_VPS11_N
PROPPIN
NBCH_WD40
U-box
Beta-prop_SPT8
zf-Nse
eIF2A
Beta-prop_RIG_2nd
WD40_like
Beta-prop_DCAF4
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
17890360
NCBI-ProteinID:
XP_006294009
UniProt:
R0FVE7
LinkDB
All DBs
Position
Unknown
AA seq
525 aa
AA seq
DB search
MNCAISGEVPEEPVISTKSGLLFERRLIERHISDNGKCPVTGEPLTIEDIVPIKAGKIIK
PKTLHTASIPGMLGTFQNEWDGLMLTNFALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANANLSNGKRAAGDDDLVPDAKKLRPGISAEIITEL
TDCNAALSQKRKKRQIPQTLASIDALERFTQLSSHPLHKTNKPGICSMDILHSKDLIATG
GVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDADLVLTASADKTVRIWRDSGDGDYA
CGHTLNDHSAEVRAVTVHPTNKYFVSASLDSTWCFYDLSSGLCLAQVSEVSGKVDYTAAA
FHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRL
WDLRKLRNFKSFLSADANSVEFDPSGSYLGIAASDIRVYQTASVKAEWNLVKTLPDLSGT
GKATCVKFGQDAQYVAVGSMDRNLRIFGLPGNEKANADEDSAQES
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtgcaatttctggagaagttcccgaggaaccagtgatttcgacgaagtctggt
ttgctcttcgagagacgactaatcgaaaggcatatatcggataatgggaagtgcccggtt
actggtgaacctcttaccattgaggacattgttcccatcaaagctgggaagatcataaag
ccaaaaacattgcatacagctagcatccctggaatgcttggaacgtttcagaacgaatgg
gatggtttgatgctaacaaattttgcactggaacaacaactacatactgcaaggcaagag
ctaagtcatgccttgtatcagcatgattctgcttgtcgtgtgattgctagacttaaaaaa
gaaagagacgaagcacgccaattgctcgcagaagttgaaagacatatacctgctgcccct
gaagctgtcacagctaatgctaatctgagcaatggtaaacgagctgcaggtgatgatgac
ctggttcctgatgcgaagaaattgcgtcctggaatttcagctgaaattatcacggaattg
actgattgtaatgctgctctttcccagaagcgcaaaaagcgacagattcctcaaacattg
gcttcaatagatgctttggagaggttcactcagctatcaagccacccacttcataagacc
aacaaaccaggcatttgttcaatggacattctacattctaaggatctcattgctactgga
ggtgttgatgcaactgctgttctctttgatcgtccttctggacaaatcttgtcaacactg
actggtcactctaagaaggttacaagcgtaaaatttgttggtgatgctgatcttgttttg
actgcttctgctgacaagacagtccgtatctggcgggactctggggatggggattatgct
tgtgggcatacattgaatgatcactctgcagaggttcgagctgtaactgtgcaccctacg
aataaatactttgtgtcagcatctcttgacagtacatggtgcttttacgatctttcctct
ggcttatgccttgctcaggtatctgaagtttcagggaaagttgattacacagctgctgct
ttccatcccgatggtctcattcttggaaccggtacttctcagtctgttgttaagatttgg
gatgttaaaagtcaggcaaatgtggccaagtttgatggacacaccggagaagttacggct
atatctttctctgaaaatggttatttccttgcgactgctgctgaggatggtgttaggttg
tgggacctgcgcaagttaaggaacttcaagtcatttttatctgcagatgcaaactctgtg
gagtttgaccctagtggatcttatctcggtattgctgcatcagatatcagagtataccag
acagcaagtgtgaaagcagaatggaaccttgtcaagacactcccagatctctccggcact
ggtaaagctacgtgtgtgaagtttggtcaagatgcacaatacgttgcagttggttcgatg
gaccgtaacctacggatatttggtcttcctggtaacgaaaaagccaatgccgatgaagat
tctgcacaagagtcataa
DBGET
integrated database retrieval system
