Capsella rubella (pink shepherd's-purse): 17890754
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Entry
17890754 CDS
T02984
Name
(RefSeq) elongation factor-like GTPase 1
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
17890754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crb03009
]
17890754
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
Pre-60S particles
GTPases
17890754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFL1
EFG_III
EF-G_D2
GTP_EFTU_D2
SRPRB
Spectrin
EFG_IV
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
17890754
NCBI-ProteinID:
XP_006296891
UniProt:
R0HJB6
LinkDB
All DBs
Position
Unknown
AA seq
1015 aa
AA seq
DB search
MDEYDGRKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAI
TMKSSSISLRYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR
QAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLIRIVHEVNGIVSAYKSEKYLSDVDSI
LASPSGELSAESLELLEDDEEVTFQPQKGNVVFVCALDGWGFGIAEFANFYASKLGASAN
ALQKSLWGPRYYVPKTKMIVGKKSLSAGSKAKPMFVQFVLEPLWQVYEAALDPGGDRTVL
EKVIKSFNLSIPPRELQNKDPKNVLQSVMSRWLPLSDAVLSMAVKHLPDPIAAQAYRIPR
LVPERKIIGGDDVDSSVLAEAELVRKSIEACDSSRDSPCVVFVSKMFAIPMKMIPQDGNH
RERMNGLNDEDSKSESDECFLAFARIFSGVLRAGQRVFVIAALYDPLKGESSHKYIQEAE
LHSLYLMMGQGLTPVTEVEAGNVVAIRGLGPYISKSATLSSTRNCWPLASMEFQVSPTLR
VAIEPSDPADMSALMKGLRLLNRADPFVEITVSARGEHVLAAAGEVHLERCVKDLKERFA
KVNIEVSPPLVSYRETIEGDGSNLLESLRSLSLNTSDYIEKRTPNGRCIIRVHVMKLPHA
LTKLLDENTELLGDIIGGKGSHSVKILESQNPSLGENVDPIEELKKQLIEAGVSSSSETE
KDREKCKTEWSKLLKRIWALGPREKGPNILFAPDGKRIAEDGTMLVRGSPHVSQRLGFTE
DSTETPSEASETALYSEALTLESSIVSGFQLATASGPLCDEPMWGLAFNVESHLAPAEDS
ETDKPEHFGIFTGQVMTAVKDACRAAVLQKNPRIVEAMYFCELNTAPEYLGPMYAVLSRR
RARVLKEEMQEGSSLFTVHAYVPVSESFGFADELRKGTSGGASALMVLSHWEMLEEDPFF
VPKTEEEIEEFGDGASVLPNTARKLINAVRRRKGLHVEEKVVQHATKQRTLARKV
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtatgatggtagaaaagttaggaatatttgtattttagcacatgtagaccac
ggtaagacgaccctagctgaccacctgattgcttcctctggtggcggtgtacttcatccg
agacttgctgggaagcttaggttcatggactatctcgatgaagaacagaggcgtgcaatc
acgatgaagagctcttcgatttctcttcgatataaagactattctttgaacctgattgat
tcccctgggcatatggatttttgtagtgaagtctcaacagctgctcggttgagtgacggg
gctttggttttggttgatgctgttgaaggtgtccatattcagacgcatgctgtgttgcgt
caagcttggattgagaaattgactccttgtttggtgcttaacaagattgatcggttgatt
tgtgagttgaagttgagccccatggaagcatatacccgtttgattaggattgttcatgag
gttaacgggattgtgagtgcttataagtcggagaagtatttgtctgatgttgactctata
ctcgctagtccctcaggtgagctttctgctgagagtctggagttgttggaggatgatgaa
gaagtcacttttcagcctcaaaagggtaatgtggtctttgtgtgtgctttggacgggtgg
ggtttcgggatcgctgagtttgccaatttctatgcctccaagcttggagctagtgcaaat
gcgttgcagaaatcattgtggggtcctcgttattacgttcctaagactaagatgattgta
gggaagaagtctttaagtgcaggaagcaaggcaaaaccaatgtttgttcagtttgtgctt
gaacctttgtggcaggtttatgaggctgcactagatcccggtggggatagaacagttctt
gagaaagttatcaaatctttcaatttatctattccaccacgcgaacttcagaacaaggat
ccaaaaaacgttcttcaatcagtaatgagccgttggcttcctttgtctgatgcagtcttg
tctatggctgtgaaacatctgccagaccccattgcagcacaggcatatagaatcccccga
ttggttccagaaaggaaaattatcggtggtgacgatgttgattcaagtgtccttgcagaa
gcagagcttgttagaaaatcaattgaggcttgtgattctagccgtgacagcccctgtgtc
gtatttgtttcaaaaatgtttgctattcccatgaaaatgattcctcaagatggaaatcac
agggagaggatgaatggtttaaatgatgaggacagtaaaagtgagtcggatgagtgcttc
cttgcatttgctaggatctttagtggggttcttcgcgctgggcaaagagtctttgtaatt
gccgctctatatgatcccctcaaaggcgaatcatctcacaagtacattcaggaagcagaa
ctgcactccctatatcttatgatggggcaaggtttaacgccagtaactgaagtggaagcc
ggaaatgtagtggctataagaggtcttggaccatatatatcaaaaagtgcaacactttca
tcgactagaaactgctggcccttagccagcatggagtttcaggtttctcctactcttaga
gtagcgattgaaccatcggatcctgcagatatgagtgctttgatgaaaggtctaagactt
ctgaaccgagcagatccatttgtggagatcacggtgtctgctagaggagaacacgttctt
gctgctgctggagaggttcatttagagagatgtgttaaagatttgaaagagagatttgcc
aaagtgaacattgaagtctccccgcctctcgtttcctacagggagaccattgaaggtgat
ggatctaatctcttggaaagtttgagatctctcagcttgaatacttctgattacatagag
aagagaactcctaatggcagatgcattatcagagtacacgtcatgaaattaccgcacgct
cttactaagctgctggatgagaacactgaattgcttggtgacataattggaggtaaaggc
agtcatagcgttaaaatactagaatctcaaaacccaagtctcggagaaaatgtggatccc
atcgaagaattgaagaaacagttaattgaagctggtgtctcatcaagttctgaaaccgaa
aaggatcgtgaaaaatgtaaaacagaatggtcgaaactactcaagaggatttgggcgctt
ggtccacgagaaaaaggtccaaacatattgttcgctccagatggtaaaagaatcgccgag
gatggaacaatgcttgtaagaggctctcctcatgtctctcaaagacttggcttcacagag
gattctactgagacaccttcagaagcatctgaaacagcactgtatagcgaagctctgact
ctcgagagcagcatcgtctcaggttttcagctagcaacagcatcaggacctctatgcgat
gaaccaatgtggggattagctttcaacgttgagtctcatctcgctcccgcagaagattct
gaaacagataaacccgaacactttggcattttcacaggacaagtcatgacagctgtcaaa
gacgcctgtagagccgccgtgcttcagaaaaatccaaggattgttgaagcaatgtacttc
tgcgaactgaacaccgcacccgagtatcttggtccaatgtacgcggttctaagcagaaga
cgagctagagtgcttaaggaagaaatgcaagaaggttcgtctctgttcacagtccatgct
tacgtgcctgtttcagaaagcttcggtttcgcagacgagctgagaaaaggaacgtccggt
ggtgcgagcgctctgatggttctcagccattgggaaatgctcgaggaagatcccttcttt
gttcccaaaaccgaagaagagatcgaggagttcggcgatggagcaagcgtgctcccgaac
acagcgaggaagctcatcaacgcagtaagacgcaggaaaggtttacacgttgaggagaaa
gtagttcaacacgccacaaaacaaagaaccttggctcgtaaagtttga
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