KEGG   Capsella rubella (pink shepherd's-purse): 17891170
Entry
17891170          CDS       T02984                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI2
  KO
K10752  histone-binding protein RBBP4
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03082  ATP-dependent chromatin remodeling
crb03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    17891170
   03083 Polycomb repressive complex
    17891170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crb03036]
    17891170
Chromosome and associated proteins [BR:crb03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     17891170
  Histone modification proteins
   HAT complexes
    HATB complex
     17891170
   HDAC complexes
    Sin3A-HDAC complex
     17891170
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     17891170
    PRC2.2
     17891170
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     17891170
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    17891170
  Chromatin remodeling factors
   NuRD complex
    17891170
   NuRF complex
    17891170
   NuRF complex (fruit fly)
    17891170
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 CAF1C_H4-bd WD40_Prp19 Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I Beta-prop_EML WD_LRWD1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_HPS5 ANAPC4_WD40 Beta-prop_SCAP WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st MIOS_WD40 Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_IFT140_1st eIF2A Beta-prop_DCAF4 WD40_MABP1-WDR62_1st DUF4989
Other DBs
NCBI-GeneID: 17891170
NCBI-ProteinID: XP_006297756
UniProt: R0HLS4
LinkDB
Position
Unknown
AA seq 421 aa
MADKGKEETGVDQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWIPLTPSPYAADPNF
GVHKLILGTHTSGGAQDFLMVADVVIPTPNGEPGLGGANQDPVIPKVEIRQKIRVDGEVN
RARCMPQKPTLVGAKTSGCEVLLFDYAKHAANPQTSECDPDLRLLGHDKEGYGLSWSPFK
EGYLLSGSQDKKICLWDVSAAPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDG
RLIIWDTRTNQMQHQVKVHEKEVNYLSFNTFNEWILATASSDSTVALFDLRKLNAPLHVL
SSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHG
GHKAKISDFAWSEKEPWVLASVAEDNSLQVWQMAESIYRDEEDAEANEDIKEDILHTSHE
N
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggcggataaaggtaaggaggagacgggagtggatcaagtcgaggaagatttctctgtt
tggaagaagaacacaccatttctctacgatcttttgatctctcacccactcgaatggcca
tctctcaccgtccattggattccattgacgccgagtccttacgcggcggaccctaacttc
ggcgtccacaagcttattctgggaactcatacttccggtggtgctcaagattttctcatg
gtcgccgacgtcgttatcccgacaccaaacggtgaacctgggctgggtggtgctaatcag
gatcccgtaattcctaaggtggagattaggcagaaaatacgtgttgatggagaagtgaac
cgagcgcggtgcatgcctcaaaagcctacgcttgtgggtgcaaagacaagtgggtgtgag
gtgttgctgtttgattacgccaaacatgctgcaaatcctcaaacgagtgagtgtgatcct
gatctgaggttactgggacatgacaaggaagggtatgggttgtcttggagtcctttcaag
gagggttatcttctgagtggttcacaggataagaaaatctgtctttgggatgtttcagct
gcaccacaagataaggttttgaatgcaatgtttgtgtatgagggacatgaaagtgctatt
gcagatgtatcatggcacatgaagaacgagaacctttttgggtctgcgggtgaggatggt
cgattgataatatgggacacacgaacaaaccaaatgcaacaccaagtgaaagttcatgag
aaggaggtgaactatctttctttcaatacattcaacgaatggatactagccaccgcttcc
tcagactctactgttgccttgtttgatcttcgtaagctgaatgcaccattgcacgtcttg
agcagccatgagggagaggttttccaagtggagtgggatcctaaccatgaaacagtactt
gcatcttctggggaagacagaaggctgatggtctgggacctgaacagggttggagaagag
cagcttgagatagagttggatgcagaagatggtccaccagagttactcttctctcacgga
ggccacaaggctaagatatcagactttgcttggagtgaaaaggagccttgggtccttgca
agtgtagccgaagacaacagtcttcaggtctggcagatggcagaaagcatctatcgcgac
gaagaggatgctgaggccaatgaggacatcaaagaagatattttacataccagtcatgaa
aactaa

DBGET integrated database retrieval system