KEGG   Capsella rubella (pink shepherd's-purse): 17891643
Entry
17891643          CDS       T02984                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03013  Nucleocytoplasmic transport
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17891643
  09122 Translation
   03013 Nucleocytoplasmic transport
    17891643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crb03019]
    17891643
   03041 Spliceosome [BR:crb03041]
    17891643
Messenger RNA biogenesis [BR:crb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     17891643
Spliceosome [BR:crb03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    17891643
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 EIF3I Beta-prop_WDR41 WDR55 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_ACSF4 Beta-prop_NOL10_N Beta-prop_Nup120_160 Beta-prop_VPS8 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_TEP1_C DSE1_N Beta-prop_DCAF4 Beta-prop_WDR75_1st Beta-prop_WDR19_1st ASA1 PKD Beta-prop_SPT8
Other DBs
NCBI-GeneID: 17891643
NCBI-ProteinID: XP_006297958
UniProt: R0G617
LinkDB
Position
Unknown
AA seq 367 aa
MYGDATNWNEDEYREAILKEREIHTRTVFRTAWAPPARIPNPDAFVVASSDGTLAFHSLN
SLVSQSASYGYSRSQDVMMAEPERVVRAHDGPAYDVKFYGEDDDALLLSCGDDGRVRGWK
WKEFSESEVSLHLQENHVKPLLELTNPQHKGPWGALSPMPEINAISVDRQSGSVFTAAGD
SCAYCWDLESGKIKMTFKGHTDYLHTVVSRSSASQILTGSEDGTTRIWDCKTGKCIRVIG
SQDKKSRIRISSLALDESESWLVCGQGKTLALWNLPASECVSTISIPAHVQDVMFDEKQI
LTVGAEPILRRFDLNGALLSQIQCAPCSVFSISLHPAGVVAVGGYGGLVDVISQFGSHLC
TFRSSLL
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgtacggagacgctacaaactggaatgaagatgagtatagagaagcaatactgaaggag
cgagagatacatacacgtacagtattcagaaccgcctgggctcctccggcgagaatccct
aatccggacgcctttgttgtcgcctccagcgatgggaccttagctttccattctctgaac
tcgcttgtgtctcaatcggcgagttatgggtactctagaagtcaggatgttatgatggct
gaacctgagagagtggttagggcacacgatggccctgcttatgatgtcaagttctacggt
gaagacgatgatgctttgctcctcagttgtggtgatgatggtagagttcgaggttggaaa
tggaaagaattttctgaatcagaggtgtctcttcacttgcaagagaatcatgtgaagcca
ttgcttgaattgactaatccacaacacaaaggtccgtggggtgctctttcaccaatgcct
gagatcaatgccatttctgttgatcgtcagtcaggaagtgtatttacagcagctggtgat
tcttgcgcatattgttgggatttggagagtggtaaaatcaaaatgaccttcaaggggcat
acagactatttgcataccgtagtttctcgtagttctgcaagtcagatattgacgggttca
gaggatgggactacgagaatctgggattgcaaaacggggaaatgcattagagtaattggt
tcccaggataaaaagtcccgcatccgcattagttctttggccctcgatgaaagtgaaagc
tggttggtttgtggacaaggtaaaactttagctttatggaatcttcctgcctcagaatgc
gtatcaacgatatccatccctgcacatgtacaggatgtgatgtttgatgaaaagcaaatt
ttgactgtaggagcagaaccaattctaaggcgtttcgacttaaatggagctttgctttcc
caaattcagtgcgctccttgttcagtattttccatttccttgcatccagcaggggtagtt
gctgtgggaggttatggaggtcttgttgatgtcatctctcaatttggaagccatctctgc
acatttcgtagcagcttattgtaa

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