Capsella rubella (pink shepherd's-purse): 17891706
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Entry
17891706 CDS
T02984
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17891706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17891706
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17891706
mRNA degradation factors
5'-3' decay
Decapping complex
17891706
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bVLRF1
Motif
Other DBs
NCBI-GeneID:
17891706
NCBI-ProteinID:
XP_006297023
UniProt:
R0G378
LinkDB
All DBs
Position
Unknown
AA seq
784 aa
AA seq
DB search
MERSDSRDLYNFVRASSLDKNSTLFDASQYEFFGQNLDEMEIGGGLDDDGVIAPVLGLTD
DDEYHLFDKGEGAGLGSLSDMDDLATTFAKINRVVPGPKHPGVIGDRGSGSFSRESSSAT
EWTHDAELTSWLDDQDEEAKRWSSQPQSFAHQKPLYRTSSYPQQQPQLQHYNSEPIILPE
SNFTSFPPPGSRSPQASPGNLHRAPSLPGGSQLTYSAPSPLSNSNFHLSGLSQGPQYGGN
LARYASCGPTLGNMVQPHWVTDPGLLHGDHSGLLHSLVQQQHQQLPPRNALMSHHLLALQ
QRQSYAQLAALQSQLYSSYPSPSRKVPFGVSEVREHKHKSSHRSRKNRGLSQQASDAASQ
KSESGLQFRSKHMTSEEIESILKMQHSNSHSNDPYVNDYYHQARLAKKSPGSKAVSHFYP
SQLKDHQPKSRNSSSEQHPQVHVDALGKITLPFVRRPHALLEVDSSPGFSDGSGDHKGSG
KHLEQEPLVAARVMIEDALGVLIDIVDIDRALQNTRPQDGGAQIKRKRQILLEGLATALQ
LADPFSKSGQKSGMTAKDDVVFLRIATLPKGRKMLTKYLQLLVPGTEIARVVCMAIFRHL
RFLFGGLPSDTLAAETIAKLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSAG
DGASVVLISLLERAAEVVVVPRVMHGNSNDGLWRASFDEFFNLLTKYCRSKYETIRGQNQ
GSAADVLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRKPSAISESASHARGGQINSE
SVRG
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgattccagggatttgtacaactttgttcgtgcttcctccttagataaa
aacagtacactctttgatgcatcacaatatgagttttttggtcaaaatctggacgaaatg
gagataggagggggtcttgacgatgatggagtgatcgctcctgttcttggacttactgat
gatgatgagtatcacttgtttgataaaggagagggtgcaggtttaggatcactatctgac
atggatgatcttgccacaacttttgcaaagataaacagagttgttcccggacccaaacac
cctggagttattggtgatagaggatcaggatccttttcaagagagagttcttctgctacc
gaatggacacatgatgctgagctcacaagctggttggacgatcaagatgaagaagctaag
agatggtcctcacagccacaatcatttgctcatcaaaaacctttgtacaggacatcctcc
tatcctcagcagcaaccacaactgcagcactacaatagtgaaccaataattttaccagaa
tcaaattttacctcatttccgccgcctggtagcagatctccgcaggcttcacctggaaat
ctccatcgtgctccttcccttcctggtggctctcagttgacctattctgcaccttcaccg
ctgtcaaattctaattttcatctttcaggattgtcacaagggccccagtatggtggtaat
ttggctagatatgcctcgtgcggtcctacacttggtaacatggtgcaacctcattgggtc
actgatccgggtcttctgcacggagatcattctggtttactacatagtctggtgcaacaa
cagcatcaacaattgcctcctcgaaatgctcttatgtcgcatcatttgctcgccctccag
cagagacaatcatatgctcaacttgcggcactacagtcccaactgtatagttcctatcct
tcgccatcccgtaaagtcccttttggagttagtgaagttagggagcacaaacataagtca
tctcatagaagtcgaaagaatagaggcctctctcaacaggcatcagacgcagctagtcag
aaaagtgaaagtggactgcagtttagatcaaaacacatgacttcagaagaaatagagagt
attctcaaaatgcagcattccaattcacacagcaatgatccttatgtcaatgactattac
caccaagctaggcttgccaagaagtctcccggatctaaagcagtctctcacttctatcct
tctcagttgaaggaccaccagcctaagtctcgtaatagtagttctgaacagcatccacag
gttcatgtagatgctcttggaaagattacacttccttttgtccgtaggccacatgccttg
ctcgaagttgactcttctcctggttttagcgatggaagtggggatcataagggctcagga
aaacatttggaacaggaacctcttgttgcagctagggttatgattgaagatgctcttgga
gttcttattgacatagttgatattgacagggctctccaaaacacaagacctcaggatgga
ggtgcccagatcaagagaaagcggcagatcctgctagaaggattagcgacagcacttcaa
cttgctgatccgttcagcaaatccggtcagaaatctgggatgactgctaaggatgatgtt
gtctttctacgtatagcgactcttcccaagggtcggaaaatgcttacaaagtatttgcaa
cttctagttccaggtactgagattgctcgagttgtttgtatggctatatttcgccacttg
agatttctgtttggcggcctgccttcagatactttagcagcagagacgatagctaaactt
gccaaagcagtcacggtttgtgttcaagccatggacctccgagcactgagtgcttgcctt
gcagctgtagtttgttcttcagagcagccgcctctgcgtcctattggaagttctgctggg
gatggtgcttcagttgtcttaatatctcttcttgagagagctgctgaagtagtggtggtt
cctcgagtcatgcatgggaattctaatgatggtctgtggagagcctcatttgatgaattc
ttcaacctccttaccaaatactgcagaagcaagtatgagacaatccgaggtcagaaccaa
ggtagtgcagcggatgttttggagctggcgataaagagggaaatgcccgctgagctgtta
cgcgcgagtctgcgtcacaccaatgacgaccaaaggaactatttactaaactttggtcgt
aaaccgtcggcaattagtgagtcggcgtctcatgcaaggggtggtcagatcaactctgag
tctgtgaggggttaa
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