Capsella rubella (pink shepherd's-purse): 17891938
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Entry
17891938 CDS
T02984
Name
(RefSeq) geranylgeranyl pyrophosphate synthase 3, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00900
Terpenoid backbone biosynthesis
crb01100
Metabolic pathways
crb01110
Biosynthesis of secondary metabolites
Module
crb_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
17891938
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
crb01006
]
17891938
Enzymes [BR:
crb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
17891938
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
17891938
2.5.1.29 geranylgeranyl diphosphate synthase
17891938
Prenyltransferases [BR:
crb01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
17891938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
17891938
NCBI-ProteinID:
XP_006298002
UniProt:
R0HZ88
LinkDB
All DBs
Position
Unknown
AA seq
359 aa
AA seq
DB search
MATTVHLSSSSLFIQSRGRRNNSISSFNNLQKHTVLSLSCAVTSQGGDMIPAEGKRNDCN
SVFDFNSYMIRKAESVSAALEIAVPLQEPFTIQEAVRYSLLAGGKRVRPLLCIAACELVG
GDEATAMPAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTSHKVFGENMAVLAGDALLAM
AFEHMTVRSSGLVVPERMIHAVIELAKAIGTTGLVAGQMIDLTSERIDPDSVGLEHLEFI
HLHKTAALLEAAAVLGVIMGGGTKEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKT
AGKDVMAGKLTYPRLIGLERSREFAEKLSMEAEEQLLGFDREKAAPLVALASYIACRHN
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggctactactgttcatctcagctcatcctctctcttcatccaatccagaggacgaaga
aacaactccatatcttcattcaataatctccagaaacacaccgttttatctctctcttgt
gcagtcacctcacaaggcggagacatgattccagcagagggaaaaagaaatgattgcaac
tcggtctttgacttcaattcgtatatgatacgtaaagccgaatctgtaagtgcggctctc
gaaattgcagtaccgctccaagaacccttcacgatccaggaagcagtgcggtactcattg
ctagctggcggaaaacgtgtgaggcctctgctctgcattgccgcctgtgagcttgtggga
ggcgacgaggctactgccatgccagctgcatgcgcggtcgagatgatccacaccagctct
cttattcatgacgatctcccgtgcatggacaatgccgacctccgtagaggcaagcccacc
agccacaaggtatttggagaaaacatggcggttttggcaggtgatgcactccttgctatg
gcgtttgaacacatgacggttaggtcgagtgggttggtcgttcctgagaggatgatccat
gcggtaattgagctggcaaaggccatagggacaacaggtctagttgctggacaaatgata
gatctaaccagcgaaagaattgatccagacagcgtcggattggagcatctagaattcatc
catctccacaaaacggcggcattattggaggcagcggcggttttaggggttataatggga
ggtggaacgaaggaagaaatcgagaagcttagaaagtatgcgaggtgtattgggctactg
tttcaggtggtcgatgatattcttgacgtaacgaaatcaactgaggaattgggtaagact
gccggaaaagatgtaatggccggaaagctgacgtatccaaggctgataggtctggagaga
tcaagggaatttgcagagaaacttagcatggaagcggaggaacagcttttagggtttgat
cgggaaaaggcggcgcctctggtggctcttgctagctacattgcatgcagacacaactga
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