Capsella rubella (pink shepherd's-purse): 17891961
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Entry
17891961 CDS
T02984
Name
(RefSeq) probable pectate lyase 10
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17891961
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17891961
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Defensin_propep
Motif
Other DBs
NCBI-GeneID:
17891961
NCBI-ProteinID:
XP_006297684
UniProt:
R0G502
LinkDB
All DBs
Position
Unknown
AA seq
442 aa
AA seq
DB search
MVVFNNRSFLALFATLLILALSVNASTIANETEELNSHSLSNTSSTVDKLPNDDGAWNEH
AVKNPDEVAAMVDMTIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGF
GRNAVGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLSQELIMN
SFKTIDGRGVNVAIAGGACITIQFVTNIIIHGINIHDCRRTGNAMVRSSPSHYGWRTMAD
GDAISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTR
DKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFL
APGNPFAKEVTKRVGSWQGEWKQWNWRSQGDQMLNGAYFTRSGAAAPASYARASSLGAKP
ASVVSMLTYSSGALKCRIGMRC
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggtggtctttaacaacagaagcttcttagctctctttgcaactctactcattctagca
ttatctgtaaatgcttcaacaatagctaacgaaacagaggagctaaactctcatagcttg
agtaatacttcatcaacggttgataagttacctaacgacgacggtgcatggaacgaacac
gccgttaaaaacccagacgaagtagctgcaatggtcgacatgacgattaagaacagtacg
gagaggaggaggttaggattcttctcatgcgccaccgggaacccaatcgacgactgttgg
agatgtgatcggaactggcatctccgacgtaagcgtctcgcgaattgcgcgatcggattc
ggacgcaacgcagtcggaggaagagatggtcgttactacgtcgttacagatccgtcagac
cacgacgcggttaaccctcgtcccggtacgctccgtcacgccgtgatccaggaccgaccg
ttgtggatcgtgttcaagagagatatggtgattactctgagtcaggagctgatcatgaac
agcttcaagacgatcgatgggcgtggcgtgaacgttgcgatcgctggtggtgcttgtatc
acgatccagtttgtgacgaatattatcattcatgggattaatatacatgattgtagaagg
actggtaacgctatggtgaggagctctccgtcgcattacgggtggaggactatggcggat
ggtgatgcgatttcgatttttgggtcgagtcatatttggattgatcataactcgttgtct
aattgtgctgatggtttggttgatgcgattatgggatctactgctattactatctccaat
aactatatgactcaccacaacgaggttatgttgatggggcatagtgattcatacaccaga
gacaagatgatgcaagtgaccatagcatataaccattttggggaagggcttatacagaga
atgccgaggtgtagacatggttatttccatgttgtaaacaatgattatactcattgggta
atgtatgcaattggtggaagtgctaatcctaccatcaatagccaagggaaccggttcctt
gccccaggaaacccttttgccaaagaggtgacgaagagggtaggttcatggcaaggggaa
tggaagcaatggaactggagatcgcagggagaccaaatgctcaacggtgcctacttcact
agatctggagctgcagctcctgcaagctatgccagagcatctagcttgggagctaaacca
gcttccgttgtaagtatgcttacctacagctccggtgcccttaaatgcaggatcggtatg
cggtgttag
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