Capsella rubella (pink shepherd's-purse): 17892213
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Entry
17892213 CDS
T02984
Name
(RefSeq) probable pectate lyase 9
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17892213
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17892213
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Paralog
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17892213
NCBI-ProteinID:
XP_006297643
UniProt:
R0G596
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All DBs
Position
Unknown
AA seq
458 aa
AA seq
DB search
MASSSPKLISACCLVLILIFVVCFLTSTNLWNNEIYSRSRKVKTEELSQSFNSSTMETRL
EGEVELNEHAVPDPDKVAHEVAALIQMSEQNITARRKLGFFSCGNGNLIDDCWRCDPKWY
KNRKHLAACGMGFGSKAIGGRDGHYYMVTDPSDEDVENPKKGTLRYAVIQGEPLWITFKR
DMVIRLKEELMMNSFKTIDARGANVHIADGACITIQGITNVIIHGLHIHDCKATGNTSVR
SSPSYDGFRGMADGDGVNVFGSSHIWIDHNSLSNCADGLVDVVMGSTAITISNNHFTHHN
EVMLLGHADWYKKDKLMQVTIAYNHFGEGLKQRMPRCRHGYFHVVNNDYTHWEMYAIGGS
ANPTINSQGNRYAAPKNRYAKEVTKRVDTEENEWKKWNWRSENDLLVNGAFFTSSGKGAS
ANYAHDLSLPAKPASMVHSVTANAGPLGCRRGKPCYTS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcttctccgaaactgatcagtgcttgttgtctggtcttgatcttgatcttc
gttgtctgctttctcacatcaacgaacctctggaacaacgaaatctactctcgctccagg
aaggtgaaaacagaggagttatcacagagctttaacagttcaacaatggagactaggctt
gaaggtgaagtagagttgaatgaacacgcagttcctgatccagacaaagttgcacatgag
gtcgctgcacttattcagatgagtgaacagaacatcactgcaaggaggaagcttggtttc
ttttcttgtggaaatggcaatctaatagatgattgttggcgttgtgaccctaagtggtac
aagaaccgtaaacacctagctgcatgtgggatgggttttggaagtaaagctattggtggt
cgtgatgggcattactatatggttactgacccgagtgatgaggacgttgagaatccaaag
aaaggaactttacgttatgctgtgatccaaggtgagccattgtggatcacctttaaaaga
gacatggtgataaggttgaaagaagagctgatgatgaatagttttaagaccattgatgct
cgtggtgccaatgtccacatcgctgatggtgcttgtataacaatccagggtataaccaac
gttatcattcatggcttgcacattcatgattgcaaggcaactggtaacacaagtgttaga
agctcaccaagttacgacgggtttaggggaatggctgatggtgatggtgttaatgtattt
ggttcaagtcatatctggatagaccacaattctctttctaattgtgctgatggtcttgtt
gatgttgtcatgggttcaactgccattaccatttctaataaccattttactcaccacaat
gaggtgatgttgctaggccacgctgattggtacaaaaaagacaagctgatgcaagtgacc
attgcgtacaaccattttggagaagggcttaaacagagaatgccaaggtgcaggcatggt
tatttccatgtggttaacaacgattacacacactgggaaatgtatgctattggaggaagt
gcaaacccaactataaacagtcaaggcaatagatatgctgctcctaaaaaccgctacgcc
aaggaggtgacaaaaagagtagacacagaagaaaatgagtggaagaaatggaactggaga
tcagaaaatgaccttctagtgaatggagcgtttttcacatcatcagggaaaggagcatca
gcaaactatgcacatgacttaagcttaccggctaaaccagcctcaatggtgcactcagtc
actgctaatgcaggtccacttggttgccgcagaggcaagccttgctatactagctag
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