Capsella rubella (pink shepherd's-purse): 17892278
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Entry
17892278 CDS
T02984
Name
(RefSeq) geranylgeranyl pyrophosphate synthase 4
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00900
Terpenoid backbone biosynthesis
crb01100
Metabolic pathways
crb01110
Biosynthesis of secondary metabolites
Module
crb_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
17892278
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
crb01006
]
17892278
Enzymes [BR:
crb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
17892278
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
17892278
2.5.1.29 geranylgeranyl diphosphate synthase
17892278
Prenyltransferases [BR:
crb01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
17892278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
17892278
NCBI-ProteinID:
XP_006300045
UniProt:
R0I8W1
LinkDB
All DBs
Position
Unknown
AA seq
370 aa
AA seq
DB search
MEAQSIFLYLLLFFLSLHFVFTTLKRRLSPANIRWLIRLLHLPIKSSVSTAVLARKNVSE
FLDSSIKQENKEEEADFDFRTYMISKAETINRALDEAIPLIEPLNIHKAMRYAVLAGGKR
VRPILCLAACELVCGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFG
ESVAILSGGALLALAFEHLTEANVSSKKMVRAVKELARSIGTKGLVAGQAMDLSSEGLDQ
NEVGLKDLEFIHVHKTGSLLEASAVIGAVIGGGSEEEIERVRSFARCIGLLFQVVDDILD
ETKSSEELGKTAGKDQIVGKLTYPKVIGLEKSKEFVKKLKRDAREHLQGFDSDKVKPLIA
LTNFIANRNN
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggaagctcaaagcatttttctctatcttctactcttctttctatctctacactttgtg
tttacaactctaaaacgacggctaagtcccgcaaacatacggtggctgattcgtctcctc
cacctcccgatcaaatcttctgtatccaccgctgttcttgccagaaaaaacgtcagtgag
tttcttgattcgtcaatcaaacaagaaaacaaagaagaagaagccgatttcgatttcaga
acgtatatgatcagcaaagcagagaccataaacagagcattagacgaagccattccactc
attgagccacttaacatccacaaggcaatgcgttacgccgttcttgcaggcggcaaacgc
gtcaggccaatactttgcctcgcggcttgcgagctagtctgcggggaggagcgtttagcg
attcaagcggcttgtgcggttgagatgattcacacaatgtcactcatcaaagatgatctt
ccttgtatggacaatgacgatctccgaagaggtaaaccaactacacacaaagtctttgga
gaaagcgtggctattctctcaggcggcgcgcttttagccctagctttcgagcatttgacg
gaagctaacgtgtcatccaagaaaatggttagggctgttaaggaattggctaggtctatc
ggaactaaaggactcgtggcgggacaagctatggatttgagtagtgaagggttagatcaa
aacgaagttggtttaaaggatcttgagtttattcacgttcataaaaccggttcgttgctc
gaagcgtcggcggttatcggagcggttattggtggtggttcggaggaggagatagagaga
gtgagaagctttgcgaggtgtattggactgttgtttcaggtggttgatgatattttggat
gagactaagtcgtcggaggagttagggaaaaccgccggaaaagatcagatcgtcggtaag
ctgacgtatccgaaagtgattggtctagagaagtcgaaggagtttgtgaagaagttgaag
agagatgcgagagaacatcttcaagggtttgattcggacaaagtgaaacctttgattgct
cttactaacttcattgccaacagaaacaactga
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