Capsella rubella (pink shepherd's-purse): 17892331
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Entry
17892331 CDS
T02984
Name
(RefSeq) exopolygalacturonase clone GBGA483
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17892331
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
17892331
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
17892331
NCBI-ProteinID:
XP_006299516
UniProt:
R0HRK1
LinkDB
All DBs
Position
Unknown
AA seq
449 aa
AA seq
DB search
MVGFRRARGVLLVVLVVMATTLANGTPIVDKAKDAAKSVGDKAKDTAAAVEAKAKDTAAA
VGAKVPGAKAGGASSDVKALGAKGDGKTDDCAAFGAAWKAACAAGGTIIVPKGEYLVEAL
EFKGPCKGPVTMELNGNLKAPAAVKSTKPHSGWVDFENIADFTLNGNKAIFDGQGALAWK
ANDCAKTGKCNSLPINIRFTGLTNSKIKSITSTNSKLFHINILNCKNITLEDIGINAPPE
SLNTDGIHIGRSNGVNILGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYP
NEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGVASNILFEDITMDNVSTPVLIDQEYCP
YGHCKAGVPSQVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGP
AVSACSNIKPVLTGKLVPAACTEVAKPGP
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtgggttttcgcagagcaagaggagtgctacttgtggtgctcgtagttatggcaacc
acattagcaaacgggacaccaatagtcgataaagcaaaggatgcagctaaatcagttggc
gataaagcgaaagatacagctgcagcagttgaagctaaagcgaaagatacagcagcagca
gttggagccaaagtacccggagccaaggcaggcggtgcatcatctgatgttaaagcatta
ggagccaaaggagacggcaaaactgatgattgtgcggcatttggagctgcatggaaagca
gcgtgtgcagcaggaggcacaattatagtgccaaaaggtgagtatttggtcgaggctcta
gagttcaagggtccatgcaaaggtccagtcactatggaattgaatggcaatctaaaggct
ccggctgcagtcaagtctactaaacctcattcgggatgggttgatttcgaaaatattgct
gatttcactttgaatgggaacaaagctatttttgatggtcaaggtgccctcgcctggaag
gccaatgactgcgccaaaactggaaaatgcaactctctccccatcaacatccgatttacg
ggtctaacaaactcgaaaattaagtccattacatcaacaaacagcaaacttttccacata
aacatccttaactgcaagaacataactcttgaggatattggtattaatgcacctccggag
agtctcaacaccgatggtatccacatcggaaggtccaacggtgtcaacatattaggtgca
aagattaaaaccggagatgactgcgtgtccattggagatggtactgaaaatctcattgtt
gagaacgtcgaatgtggaccaggacatggtatttccatcggaagtcttggaaggtaccct
aacgagcaacccgtgaaaggagtcacagtgaggaaatgcctcatcaagaacactgacaat
ggagttcgcatcaagacatggcctggatctccccccggtgttgcctccaacattcttttc
gaagatatcacaatggacaacgttagcactcccgttctcatcgaccaagagtattgtcct
tatggccactgcaaagctggggtaccatctcaagtgaagttgtcggacgtgactatcaag
aacattaagggcacatcagcgacaaaggtggctgtgaaactaatgtgcagcaaaggcgtg
ccttgcaccaatattgccctctctgacatcaacttggtccacaacggtaaagaaggacca
gctgtctcggcatgttctaacatcaagcctgttctcaccggaaagttggttccagcggct
tgcactgaagtagctaaaccgggtccttaa
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