Capsella rubella (pink shepherd's-purse): 17892525
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Entry
17892525 CDS
T02984
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crb03009
]
17892525
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
90S particles
Other 90S particles
17892525
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
17892525
NCBI-ProteinID:
XP_023641257
LinkDB
All DBs
Position
Unknown
AA seq
1929 aa
AA seq
DB search
MVIPSKKFSNGKRHESTKSFKPTKKPFKKSKDDVAARSEAMALQLEDVPDFPRGGGTSLS
KKEREKIYEEVDAEFDADERVSKKSKGGKPKKRTPSDADELGLLFGGLTGKRPRYANKIT
TKNIAPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEASDFTDLGIEDDENELLGDIIS
VGQLVPCIVLQLDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSVEDHGY
ILHFGLPSITGFIEISNDGKKPGKLESGMKTGQLIQGVVTKIDRERKIVRLNSDPESVAK
CLTKDLNGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKD
EYNQNKTVNARILFIDPSSRAVGLTLNPHLVCNKAPPLHVSSGSIFDEAKVIRIDKSGLL
LELPSNPETTPAYVSTYDAAGDEVKKLEKKFKEGNHIRVRILGLKQMDGLAIGTLKESAF
EGPVFTHSDVKPGMVTKAKIISVDTFGAIVQFPGGLKAMCPLRHMSEFEVTKPRKKFKVG
AELVFRVLGCKSKRITVTYKKSLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFY
NGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSVVHGSRRITLSLMIKPASVSEDDS
IKLGSIVSGIIDSITSQAVIVRVKSKGVLKGTIAAEHLADHHEQAKLMKSLLRPGYELDK
LLVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLT
GFAPRSKAIDEPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQDY
FLMDEKISDLQSSDITKNECSWVEKFSIGSLIKGTIKEQNDLGVVVNFENINNVLGFIPQ
HHMGGATLVPGSVVNALVLDLSRAERLVDLSLRPELINNLTKEVSNSQSKKKRKRVISKE
LEVHQRVNAVIEIVKEQYLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVAFVEA
VQNPLSSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSAVHAEITEIKPFELRVNFGHS
FRGRIHITEVNDASTSEDPFAKFRVGQSMSARVVAKPCHTDIKKSQLWELSVKPAMLRDS
SELNDIQESEQLEFAAGQCVSGYVYKVDKEWVWLAISRNVTARLFILDTACEAHELEKFE
RRFPIGKAVSGYVLTYNKEKKTLRLVQRPLLDTHKSIGNGEGRKTDKLDSSIPDDDGTLF
IHEGDILGGRISKILPGIGGIRVQIGPYVFGRVHFTEINDLWVPNPLDGFHEGQFVKCKV
LEISRSSKGTWQIELSLRTSLDGMNSDHLSEDCSNNENVCKRFQRIEDLSPDMGVQGYVK
NTMSKGCFIILSRTVEAKVLLSNLCDTFVKEPEKEFPVGKLVTGRVLNLEPLSKRIEVTL
KTVNAGGHPKSESYDLTKLHVGDIISGRIKRVEPYGLFITIDQTGMDGLCHKTQLSDDRI
ENVQAKYKAGERVTAKILKLDEEQGRISLGMKSSYLTSGDVETQPPSENNANDASMECDS
INDPKSEVLAAVGDFGFQEISGGRHSGTSVVLAQVESRASIPALEVDLDDIEEMDIDNGQ
NQEKLQGVNRDEKSKRREKQKDREEREKRIQAAEGRLLENHAPESADEFEKLVRSSPNSS
FVWIKYMAFMLSLADIEKARSIAERALSTINIREEEEKLNIWVAYFNLENEHGSPPEEAV
KKVFERARQYCDPKKVYLALLGVYERTEQNKLADKLLDEMIKKFKQSCKIWLRKVQSSLK
QNEEGIQSIVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLW
SVYLDQEIRLGEVDVIRSLFERAISLSLPPKKMKFLFKKYLEYEKSVGDEERVEYVKQRA
MEYADSTLA
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atggtgataccgtcgaagaaattttccaatggaaaacgtcatgaatctacaaagtccttt
aaaccaacgaagaaaccgtttaaaaagtccaaggacgatgtagctgcaaggtctgaagcc
atggctctgcagctcgaagatgttcctgacttccctcgaggtggaggtacttctctgagt
aaaaaggagcgtgagaaaatttatgaagaagtggatgctgagtttgacgctgatgagcgt
gtttctaagaagagtaaagggggcaagcctaaaaagagaacacctagcgatgcagacgaa
ttgggattgctttttggcggccttaccggaaaacggccaagatatgccaataagattacc
actaagaatattgccccaggaatgaagcttttgggagttgttactgaagtaaaccagaag
gatattgtaattagtcttccaggggggttacgtgggttagttcgcgcaagtgaggcatcg
gattttacagatcttggaattgaggacgatgaaaatgaactccttggagacattatttct
gtgggtcagcttgttccctgcattgtattgcagttagatgatgataagaaggaggcgggc
aaaaggaaaatatggctttcattgcggctttctctattgcacaagggattcagttttgat
tcttttcaactagggatggtgttttctgctaacgtgaaaagtgtcgaagaccatggttat
atccttcactttggattaccttctatcacaggatttatcgagataagcaatgatggtaag
aaaccaggaaagctggagtcaggaatgaagactgggcagcttattcagggcgtggttaca
aagatcgatagagaacgtaaaattgttcgccttaattctgatccagaatcagtggcaaag
tgtctgaccaaggatcttaatggcatgtcgtttgatcttctcatcccaggcatgatggtt
aatgctcgtgttcaatcagttcttgagaatgggatactgttcgatttccttacatatttt
aatggaacggttgatctcttccatcttaaaaacccattgtctaacaaaagctggaaggat
gagtataatcagaataagacggttaatgcaagaatattgtttatcgatccatcatctaga
gctgttggtttaacattgaaccctcatcttgtttgtaataaggctcctccgttgcatgtc
tctagcggcagcatatttgacgaagcaaaagtaattcgtattgataaatcaggccttctt
ctggaacttccttctaatcccgaaacaactccagcatacgtcagtacatatgatgccgca
ggagatgaagtaaagaaactggaaaagaagtttaaggaagggaatcacatccgtgttcga
atacttggccttaagcagatggatgggttggccataggaactttaaaggaaagcgccttt
gaaggtccagttttcacccactcagatgttaagcctggtatggttacaaaggcaaaaatt
atatctgttgatacgtttggtgccattgtgcaattccctggtggtctcaaagcgatgtgc
ccacttcggcatatgtctgagtttgaagttacaaaacccaggaaaaagttcaaggttgga
gctgaattagtattccgtgtacttggctgcaaatcaaagagaataactgttacctacaag
aaatcgcttgtgaagtctaaacttccaattttaagttcttacactgatgcaactgaaggg
ctagtgacgcatggctggattacaaagattgaaaagcatggatgttttgttcgcttttat
aatggagtgcaaggatttgttcccagatttgaacttggtttagagcctggaagtgatcca
gattcagtgtttcatgtcggagaggttgtaaaatgtagagtaaccagtgtggttcatggt
tctcgaaggatcacccttagtttgatgataaagccagcaagtgtttccgaagacgattca
atcaagttaggtagcattgtatcagggataattgatagtataactagccaggcagtcatt
gtccgtgttaaatccaaaggtgttctcaagggtacaattgctgctgaacatttagctgat
catcatgagcaagcaaaactaatgaagtcacttttaagacctggatatgagcttgataag
ctgctggtattagacattgaaggcaacaacatggctctctcttcaaaatattctctcatt
aagttagctgaagagcttccttcagattttaatcagcttcagccaaactcagtggttcat
ggttatgtttgtaacttgattgaaaatggctgctttgtccgttttcttggtcggctgact
ggttttgccccaagaagcaaggcaattgatgaacccagggcagatctgtcagaatccttc
tttgttggacaatcggttcgggctaatatagttgatgtcaatcaagaaaaaagtaggata
actctttcattgaaacagtcatcttgcgcatctgtagatgcttcttttgtccaagattac
ttcctcatggatgagaagatatcggacttgcagtcatctgatattactaaaaatgagtgt
agttgggttgagaaattctcaattgggagtttgatcaagggcaccataaaggaacaaaat
gatctgggtgtggtggtgaattttgaaaatataaataacgtccttggttttatacctcag
catcatatgggtggagctactttggtacctggttctgttgtcaatgcacttgttcttgat
ctttctagggcagagagactagttgatttgtctttgaggcctgagctcataaacaactta
actaaggaggtgtccaacagtcagtcaaaaaagaaacgtaaaagagtaatctccaaggaa
cttgaagtccaccagagggtcaatgctgtaatagagattgtgaaggagcaatacttggtt
ttgtcgattccagagcatggttacactataggatatgcatcagtatcagactataacaca
cagaagttgccagtgaaacaattttccactggacaaagtgttgttgcctttgttgaggct
gtgcaaaaccctttatcgtctgggaggttgcttttacttcttgactctgtttccgggact
tctgagacttcccgttctaagagggcaaagaagaaatccagctgtgaagttggttctgct
gtccacgccgagattactgaaataaagccttttgaacttagagtaaactttggccacagt
ttccgaggaagaatccatatcactgaggtaaatgatgcaagtacaagtgaggatcctttt
gccaaattcagagtcgggcaatcaatgtctgcaagggttgttgcaaaaccgtgtcatact
gatattaaaaagagtcaactttgggagctttctgttaagcctgcaatgcttagagattcc
agtgagttgaatgatatacaagagagtgaacaacttgagtttgctgctggacaatgtgtt
agtggatatgtctacaaagtggataaggagtgggtttggttagcaatatctcgcaatgtg
accgcacgcttgttcattttagacactgcatgcgaagctcatgaacttgagaagtttgaa
aggcgttttcccattggcaaagctgtttcaggctatgttctgacatacaataaagagaaa
aaaacattacggttggttcagcgtccactacttgatacccacaaaagcattggcaatggt
gaaggcagaaaaacggataaactagatagcagcattcctgatgatgatggtactctattt
attcatgaaggagacattctgggtggaagaatttctaagatacttcctggtattggtggg
attcgtgtgcaaataggtccttatgtatttgggagagttcattttactgaaatcaatgat
ttatgggtccccaatcccttagatggttttcatgaaggccagtttgtcaaatgcaaggtc
ttagaaatcagcaggtctagtaaagggacttggcaaattgaactctcattacggacatca
ctagatggcatgaattctgaccatctctcagaagattgtagtaataatgaaaatgtatgc
aagcgttttcagaggattgaagatctatctcctgatatgggcgtccagggttatgtcaaa
aatacaatgtcgaaaggttgttttattatactttcgaggacagttgaggcaaaagttcta
ctttccaatctatgtgatacttttgttaaggaacccgaaaaggaattcccagtaggaaaa
cttgtaactggcagggttttaaatttggagcctttatctaagcggatagaagtcactttg
aagacagtaaatgctggtggacatccaaaatctgaatcttatgacttgacgaaactccat
gtcggagatataatttctgggagaatcaaacgtgtggagccctatggcttattcattacc
atagatcaaactggcatggatggattatgtcacaaaacccagctttctgatgatcgtatc
gagaatgtacaagccaaatataaggctggtgagagggtcaccgcaaagattttgaagctt
gacgaggaacagggacggatatcgctcggaatgaagagttcttatcttacgagtggtgat
gtcgagacacaaccaccttctgaaaacaatgctaatgatgcaagcatggaatgtgattca
atcaatgatccgaagtcagaagtacttgctgcagtcggtgattttgggttccaagaaatt
agcggtggaagacatagcggaacctctgttgttcttgcccaagtagaatcaagagcttct
atccctgcgcttgaggttgaccttgatgacattgaggagatggacattgacaacggccag
aatcaggagaaactacagggagtcaatagagatgaaaagagcaaaagaagggagaagcaa
aaagacagggaggaaagagaaaaaagaatacaagctgctgaaggaagattgctggagaat
catgcacctgagagtgctgatgagtttgagaaattagttagaagctctccaaacagcagc
tttgtctggataaaatatatggcgtttatgctcagcttggctgatattgagaaagccagg
tcaattgctgagagggccttgagtactataaatattcgggaggaagaagagaagctaaac
atatgggttgcttacttcaatttggaaaatgaacatggaagtcctccagaggaagctgtt
aagaaagtgtttgaaagggcccgtcaatactgtgacccaaaaaaagtttaccttgcactc
ttgggcgtgtatgagaggacagagcaaaataaattggctgataagctacttgatgagatg
attaagaagtttaagcaatcttgcaagatttggttaaggaaagtacaaagttctcttaaa
caaaacgaggaaggcattcagtccattgtgaatcgtgccttgctatgtcttccacgccat
aagcacattaagttcatatcacaaactgctatccttgagttcaaatgtggagttgcggat
agagggagatcactgtttgaaggcgttcttagggaatacccaaaaagaacagacttgtgg
agtgtttatctagaccaagagatccggctgggagaagtggatgttattagatctttattc
gagagagccattagcttgagcttgcctcctaagaagatgaagttcttgttcaagaagtac
ttggaatatgaaaaatctgttggtgacgaggagagagtcgaatacgtgaaacagagggcg
atggagtatgcagacagtaccttggcctga
DBGET
integrated database retrieval system
