Capsella rubella (pink shepherd's-purse): 17892767
Help
Entry
17892767 CDS
T02984
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
17892767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crb03036
]
17892767
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
17892767
SWR1 complex
17892767
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
17892767
NCBI-ProteinID:
XP_023642511
LinkDB
All DBs
Position
Unknown
AA seq
2038 aa
AA seq
DB search
MASKGGKSKPDMVMASKGGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSK
DFESERKWKLAQAKKVALRASKGMLDQASREERKLKEEEQRLKKLALNISKDMKKFWMKV
EKLVLYKHQLARNEKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKQGENASPKALLAI
ESKTDEERAEQRPPEINSCLESGSPEIDEDYDLKSEDETEDDENTIEEDEKHFTKRERQE
ELEALRDEVDLPVEELLRRYTAGRVSQEISPENDESGDKVAAVDQNHGEADMNNLTASEE
TEESPSVRRSNDSFGHLTIPKTHSHDVEPGMTTASAKSRKEDHTYDFNDEQEDVDFVVAT
GEEKDDETTLSVEEELAKADNEDHVEEIALLQKESEMPIEVLLARYKEDFGDKDISEDES
EYSCAQSEESVVDSGENRQQANSDDENVDSTECNQDPKPCSEKVVNTAHEITEDNGKDSS
DKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHSLREYQHIGLDWLVTMYEKRLNGIL
ADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGS
AKERKIKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQT
LLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKI
NKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQAT
LNSGSFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMAGIDVQLSSTVCSLLLENPFSKV
DLEALGFLFTHLDFSMNSWEGDEIKVISTPSELIKQRADLKNNSEGIPLSSINHKNLQGT
NIFEEIRKAVFEERVKETKDRAAAIAWWNSLRCQRKPTYSTSLRTLLTLKSPIDDIHHLK
ANRSSYMYSTILADIVLSPIERFKKIIDLVEAFTLAIPAARVSSPACWCSRRDSPVFLSP
SYKEEVRDLLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAMLLRKLKFGGHRALI
FTQMTKMLDILEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGGVG
INLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKR
ALDNLVIQNGEYNTEFFKKLDPMELFSGHKALTTKDEKEASKNCGAEVPLSNADVEAALK
QAEDEADYMALKRVEQEEAVDNQEFTEEPVERPEEDELVNEDDLKADEPTDQGLVASGST
KEEIPLLHGDTRDEIAVITTSSQEDDADVLDDVKQMAVAAAAAGQAISSFENQLRPIDRY
AIRFLELWDPIIVETAMENEAGFEEKEWELDHIEKYKEEMEAEIDDGEEPLVYEKWDADF
ATEAYRQQVEVLAQHQLMEDLENEAREREAAEMAEMDLIQNETPLVLKSKKKKKVKKAKF
KSLKKGSLAAESKHVKSVVKVEDSTDDDNEEFAYVSSSDSDLVTPLSRMHMKGKKRDLIV
DTEEEKTSKKKAKKHKKSHLNSDIKYKQPRALHDELEPSKPPDSMVVDNELKLTNRSKTI
GKKFITSMPIKRVLMIKPEKLKKGNLWSRDCVPSPDSWLPQENAILCAMVHEYGPNWSLV
SGTLYGMTAGGAYRGRYRHPAYCCERYRELVQRHIMSASDSAVNEKNLNAGSGKALLKVT
EENIRTLLNVAAEQPDTEMLLQKHFSCLLSSIWRTSTRSGNEQLLSLNNPIFNRQFMGSV
DHSQDIARKPWQGMKITSLSRKLLEAALQDSSTSQPNNTVSHSRLQENQPINKVGLDLTL
EFPGGNDDSLPQFPPMISLSIDGSDSLNYVNEPPGEDVLKGSRVAAEDRYRNAANACIED
SFGWASNTFPANDLKSRTGSKAQSLGKHKPSVADSAKSSKSKQRKLLAEQTEVAWVRPDD
PNLKFDFTPGDREDEEVEVEEKAVLEEIEMISCSQWYDPSFTAGLDDCSLASEISEIE
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaaaggtgggaaatctaaacctgacatggtaatggcgtccaaaggtgggaaa
tccaaacctgacaatgagtctagagctaagcgccagaagacgctcgaagctcctaaagaa
ccacgtcgccctaaaactcactgggaccatgttttggaagagatggcttggctgtccaag
gactttgagtctgagaggaaatggaagctggcgcaggccaagaaggttgctttgagggcc
agcaaaggcatgcttgatcaggcatctagagaagaaaggaagctaaaggaagaagaacaa
cgattaaagaaattagccctcaatatctcgaaagacatgaagaagttttggatgaaagtt
gagaagctggtgctttacaagcatcagctggcacgcaatgagaaaaagaagaaggctatg
gacaagcagcttgagtttctgttaggccaaaccgagaggtactcaaccatgttggcagaa
aatttagtggaaccttataaacagggcgaaaatgcttctccaaaagcactgcttgctatc
gaatcaaaaactgatgaggagagggcagaacagagacctccagagataaattcttgtctt
gaatcaggaagtcctgaaattgatgaggattatgatctaaaatccgaggatgagaccgaa
gatgatgaaaatactattgaggaggatgaaaaacactttaccaaacgggaaagacaggaa
gagttggaagctttgcgagatgaagtggatctaccagttgaggagctgctcagacgttat
actgctgggagagtcagccaagaaatcagcccagaaaatgatgaaagtggagacaaagtg
gccgcagtagatcaaaatcatggagaggcagacatgaacaatcttactgcttctgaagaa
actgaagagagcccaagtgttcgtcgttctaatgatagtttcggtcatttgacaataccc
aagacccattctcatgacgttgagccaggcatgacgactgcctctgcgaagtccagaaag
gaagatcatacttatgattttaacgatgaacaggaagatgttgactttgttgttgccact
ggtgaggaaaaggatgatgagacaacactttctgttgaagaggaattagcgaaagcagat
aatgaagaccatgttgaagagattgctctgctgcaaaaagaaagtgaaatgcctattgaa
gtactgctcgcaaggtataaggaggatttcggtgacaaggatatttctgaggatgaatct
gaatattcatgtgctcagtctgaagagtctgttgtagactctggcgaaaataggcagcaa
gctaattcagatgatgagaacgttgattcaacagaatgtaatcaagatccaaagccttgc
tcagaaaaagttgttaacacagcccatgaaataacagaagataatggtaaagatagtagt
gataaaattgctgatgcagcagcagcagcaagatctgcgcagccaactggatttacgtac
tctacaacaaaagttagaacgaaactgccgtttcttctcaagcattctctgcgtgagtac
caacacattggtctggattggcttgtcacgatgtatgagaaaaggttgaacgggattctg
gctgatgaaatgggtcttggaaaaacaattatgaccattgctcttctagcacaccttgca
tgtgataagggaatttggggtccccatctgatcgtagttccaacaagtgtgatgcttaat
tgggaaactgagtttcttaaatggtgtcctgcatttaaaattctcacctacttcgggagt
gcaaaggagaggaaaatcaagagacaaggatggatgaagcttaactcatttcatgtatgc
ataacaacctataggctagttattcaggacagcaagatgttcaagcgcaagaagtggaag
tacttgattcttgacgaagcccatttaattaagaattggaagtctcagagatggcaaaca
ctattgaacttcaattctaaacgcagaattttgttgactggtacaccgctgcagaatgat
cttatggaattgtggtcactgatgcattttctgatgcctcatgtctttcagtctcaccag
gaattcaaagattggttctgtaaccctatagcagggatggttgagggacaagaaaaaatc
aacaaagaagttattgatcgcttacataatgtcctccgtccttttcttctacggcgttta
aaaagggatgtggagaagcaacttccatcgaaacatgagcatgttattttctgtagactg
tctaagaggcagcgcaacttgtatgaagacttcatagcaagcacagaaacacaggctacg
cttaacagtggaagcttttttgggatgataagtatcattatgcagttgcggaaagtgtgt
aatcatcctgatctctttgagggtcgtcctattgtaagttcttttgatatggctggcatt
gatgtgcagttgagctcaactgtctgttcgctgcttttggaaaatccgttttccaaggtt
gatctcgaggctttgggattcttgttcacacatcttgatttttctatgaattcttgggaa
ggagatgagattaaagttatttcaacgccctcagaattaatcaagcaacgtgccgacttg
aagaataattcagaaggaatccctttgagttcgataaaccacaaaaatctgcaagggaca
aatatttttgaagagattcgtaaggccgtctttgaggaaagggttaaagaaactaaggat
cgggctgcggccattgcatggtggaattctttgagatgtcagagaaagccgacttactct
acatctctaagaactcttttaaccctaaagagtcctatcgatgatatacaccatcttaaa
gctaatcgttcatcttacatgtattccacaatcctcgctgacatagttctttcaccgatc
gagcgctttaagaagataattgacctagtcgaagctttcacacttgcgattccagcagca
cgagtatcttcacctgcttgctggtgtagccggcgtgactctcctgtttttcttagtcca
tcttacaaggaggaagttagagatttattgtcacctcttttgtctccaattagacctgca
atcgttcggagacaagtatattttccagataggcgactgatacagtttgattgtggtaag
ctgcaggagcttgctatgttgttgaggaaattaaaatttgggggtcacagagcgttgata
ttcacgcaaatgaccaagatgcttgacatcttggaggctttcattaatttatatggttat
acctacatgcgtcttgatggctccactcctccagaagagaggcagacgttaatgcagcgg
tttaatacaaatcccaaaatctttcttttcattttgtcaacccgaagtggtggcgttggc
atcaatcttgtgggtgcagacacagttatattctatgacagtgactggaatcctgctatg
gatcaacaagctcaagatcgctgccacaggataggtcagacacgtgaagtccatatttac
cggttgataagtgagagcaccattgaagagaatatcttaaagaaagcaaatcagaagcgt
gcgcttgataaccttgtaattcaaaacggtgagtataacaccgaatttttcaagaagctt
gatcccatggagttgttctctgggcataaggctctgactacaaaggatgagaaggaagca
agcaagaattgtggggcggaggtacctctgtcaaatgcagatgttgaggctgctttgaaa
caggctgaagatgaggcagattatatggctctaaaaagagtagaacaagaagaagctgtg
gacaatcaagagtttacagaagaacctgtagagagaccagaagaagatgagctagtaaat
gaagatgacctaaaggctgatgagcctactgatcaaggtttagttgcatcagggtcgacc
aaagaagaaattccattgttacatggtgataccagggatgagatagctgttatcactact
tcaagccaagaagatgatgctgatgtattagatgatgtcaagcaaatggctgtagcagct
gctgctgctggacaagctatctcatcttttgagaatcagttacgtcctattgatagatat
gcgattagatttttagagctttgggaccccatcattgttgagactgcaatggaaaatgaa
gcggggttcgaagagaaagaatgggaacttgaccatattgaaaagtacaaggaggaaatg
gaagctgagattgatgatggggaagagcctcttgtttatgagaaatgggatgctgatttt
gcaactgaagcatacaggcagcaagtggaagtcttagctcagcaccagttgatggaagat
ttggaaaatgaagctagagagagggaagctgctgagatggccgaaatggatctgatacag
aacgaaactcctcttgtactgaagtctaagaagaagaaaaaagtgaagaaagccaaattt
aaatccctgaagaaaggatcactggctgctgaatcaaaacatgtgaagtccgttgtgaaa
gttgaagattcgactgatgatgataatgaagaattcgcctatgtgagtagcagtgactca
gatttggttacaccgctttcgcgaatgcatatgaaaggcaagaaaagagatttaattgtt
gacacagaagaagagaagacctcgaagaagaaagcaaagaagcataagaagtctcatctg
aattcagatatcaaatacaaacaaccaagggctctacatgatgaactggaaccatcaaag
ccgcctgatagtatggtcgttgataatgaattgaaactgacgaacaggagtaaaactata
gggaaaaaattcatcacttccatgccaataaagcgtgttcttatgatcaagccagagaag
ctgaaaaaagggaatctgtggtctagagactgtgttccctcgcctgattcttggctgcct
caggaaaatgctatattgtgtgccatggttcatgaatatgggcctaattggagtttagtt
agcggaactctttatggaatgacagctggtggggcttacaggggacggtatcgccatcct
gcatattgttgtgagagatatagagagcttgtccagcgacatattatgtctgcttccgac
agtgcagtgaacgagaagaacctcaacgcaggttctgggaaggcgctccttaaagtcact
gaggaaaatattcggacactccttaatgttgcagctgagcagccagatacggaaatgctc
ctacaaaaacatttttcttgcttgctgtcatcaatttggaggacgtcgacccgttcaggg
aatgaacaactgctatccttaaacaatcccatttttaatagacagtttatgggctccgtg
gatcactcccaagatatagccagaaagccttggcaggggatgaagatcaccagcttaagt
agaaagttgttagaagccgctctccaggattccagcacgagtcagccaaacaatacggtt
tcccattctaggttgcaggagaatcaacctatcaataaagtgggattagacttaaccttg
gaattcccaggtggcaatgatgattccctgcctcagtttccacccatgataagtctgtcc
attgatgggtcagattcattaaattatgtgaacgagcccccaggggaagatgttcttaaa
ggttctagggttgctgcagaagaccgttacaggaatgctgcaaatgcttgtattgaagat
tcatttggatgggcttcaaacacattcccagccaacgacctgaagtcaagaacaggctcg
aaagcacagtccctggggaaacataagccatctgtcgcagactcagccaagtcttcaaaa
agcaaacagcgcaaactcttagcagagcaaacagaagtagcatgggttaggccagatgac
ccaaatctcaagtttgatttcacacctggggatagggaggatgaggaggtggaggtggag
gagaaggcggttttagaagagatagagatgataagttgttcacagtggtatgatccatcc
ttcactgcaggccttgatgattgctcattagcttcggaaatctcagaaatagagtag
DBGET
integrated database retrieval system
