Capsella rubella (pink shepherd's-purse): 17893058
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Entry
17893058 CDS
T02984
Name
(RefSeq) pre-mRNA-splicing factor prp12 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17893058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17893058
03041 Spliceosome [BR:
crb03041
]
17893058
03036 Chromosome and associated proteins [BR:
crb03036
]
17893058
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
17893058
Spliceosome [BR:
crb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
17893058
Complex B
17893058
Complex C
U2 SnRNP specific factors
17893058
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
17893058
TFTC complex
17893058
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
MRP-S34
Motif
Other DBs
NCBI-GeneID:
17893058
NCBI-ProteinID:
XP_023641465
LinkDB
All DBs
Position
Unknown
AA seq
1368 aa
AA seq
DB search
MMAAPEDESSAQSQSSSATAAPPSASPSSAGDHYLAKCILRPSVVLQVAHGYFRSRSSRD
IVFGKETCIELVIIGEDGVVESVCEQNVFGTIKDLCVIPQNNKLYSNRLQMGKDLLAVLS
DSGKLSFLSFSNEMHRFSPIQHVQLSSLGNSRVQLGRMLTVDSSGLFLAVTAYHDHFALF
SLSTSSMGDIIHERISYPSEDGGNGSSVQAISGTIWSMCFISKDFNESKEYGPVLAIVIN
RKGSLINELVLFRWNVKEESMCLISEYVEAGALAHSIVEVPHSSGFAFLFRIGDALLMDL
RDPQNPCCLFRTSLDLVPASLVEEHFVEDSCRVQDGDDEGLFNVAACALLELRDYDPMFI
DTESDIGKLSSKHVSSWTWEPEINHNPRMIICLDDGEFFMFELIYEDDGVKVNLSECLYK
GLPCNKILWVDGGFLATFAEMADGTVFRLGTEKLHWMSSIQNIAPILDFSVMDDQNEKRD
QIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVE
ETRILSVGLSFKDVTDSVGFQSDVCTLACGIVADGLLVQIHQDAIRLCMPTTDAHSDGIP
VSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGIKSLSSQSCEIYEIQRVTLQ
YEVSCISVPQKNIGKKRSRASSLDNSCKAAIPSGMEQGYTFLIGTHKPSVEVLSFSEDGV
GVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWPPFSHTSG
LNCPDYFSYCKEEMDIVVGKRDDLPINLLLIATRRIGITPVFLVPFSDSLDSDIIALSDR
PWLLQTARQSLSYTSISFQPSTHATPVCSSECPQGVLFVSENCLHLVEMVHSKRLNAQKF
HLGGTPRKVIYHSESKLLIVMRTDLYDTCTSDICCVDPLSGSVLSSYKLKPGETGKSMEL
VRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRLIILSLEHTHNSDSGSMTICSKAGSSS
QRTSPFRDVVGYASEQLSSSSLCSSPDDNSYDGIKLDEAETWQLRLASSTTWPGMVLAIC
PYLDHYFLASAGNAFYVCGFPNDNPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVL
FYSYHEDSKKLLQIYCDPAQRLVADCFLMDGNSVAVSDRKGSIAILSCKDHSDFEYSSPE
SNLNLNCAYFMGEIAMAIKKGCNIYKLPADDGLQSNGLSKSINTADDTIIAGTLLGSIFV
FAPISSEEYELLKAVQAKLGIHPLTAPVLGNDHKEFRGRENQSQATKILDGDMLAQFLEL
TNRQQESVLSTPQPSQSTSKASSKQLSFPPLMLHQVVQLLERVHYALH
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgatggccgctccggaggatgaatcttccgctcagtctcaatcatcctctgccacggcg
gctcctccatccgcttctccttcctccgccggggatcattaccttgctaagtgcatcctt
cgccccagcgtcgttctccaggttgctcatggctacttccgctcccgttcctcccgcgac
atagttttcggcaaggagacatgcatagaattggtgattattggtgaagatggggttgtt
gaatcggtctgtgaacagaatgtctttggaacaattaaggatttatgtgtcatacctcag
aataataaactatattcaaatcgtttgcagatggggaaagaccttctggctgttctttct
gattctggaaagctctcttttctctcatttagcaatgaaatgcacaggttctcgcccatt
caacatgttcaactttctagcctaggtaactcaagagttcaacttggaagaatgctcaca
gtagattccagtggtctctttcttgctgtcactgcgtatcatgatcattttgctctgttt
tccctctcaacatcgtctatgggtgatattattcacgagaggatttcttatccttctgaa
gatggagggaatggtagctctgtacaagcaatatctggtactatttggagcatgtgtttc
atttccaaagattttaatgaatccaaggagtatggtcctgttcttgccattgttataaat
aggaaagggtctctcataaatgagctggttctatttagatggaatgtcaaagaggaatcc
atgtgtttaatatcagagtatgttgaagctggggctctagcacatagtattgtcgaagtt
cctcactcctctggatttgcctttctgtttaggattggtgatgcgctcttaatggatctt
agagatccccaaaacccttgctgtctgtttaggacatccttagatcttgttcctgcttca
ttagtggaagagcattttgttgaagactcatgtagagtacaagatggagacgatgagggc
ctttttaatgttgctgcatgtgctttgttagagctcagggattatgatcccatgttcata
gatactgaaagcgacattggaaagctgagttctaagcatgtctcttcatggacttgggag
ccagaaattaatcataatccgcggatgattatttgcttggatgatggtgaatttttcatg
tttgaactcatatatgaagatgatggggttaaagtaaatctatcagagtgtttatacaaa
ggtttaccatgcaacaaaattttatgggtcgacggtggattcttggctacgtttgcagaa
atggcagatggaacggttttcagattgggaactgaaaagctacattggatgagttccata
caaaatattgctccgatcttggatttttcagttatggatgaccaaaatgagaaacgagac
caaatatttgcttgctgtggtgtaacccctgaaggctccttgagaattattcgtagtggc
attaatgtagaaaaacttctgaaaaccgcgcctgtttatcaaggaataactggtacttgg
actgttaaaatgaagcttactgatgtataccattcatttcttgttttgtcatttgttgag
gagaccaggattttatcagttggtttaagctttaaagatgtcactgattcagttggtttc
cagtctgatgtttgcaccttggcatgtgggattgttgctgatgggttgttggttcagatt
caccaagatgcaataagactgtgcatgcccacaacggatgctcattctgatggtattccc
gtctcttcaccatttttctcgtcgtggtttccagaaaatgtcagtatcagcttgggtgca
gttggtcaaaatttgatagttgtctctacgtctaacccttgtttcttgtccattcttggg
atcaaatcactatcatctcaatcctgtgaaatctatgaaattcaacgagtaacattgcag
tatgaagtttcctgcatctcagttcctcaaaaaaatattggaaaaaagagatcccgtgct
tcttccctggataatagttgcaaagctgcaattccttctggtatggagcaaggctatacg
tttttgattggcacacataagccttctgttgaggtcctctccttctcagaagatggtgtc
ggtgtacgagtccttgcttctggattggtatcattaacaaatacgatgggaactgttatt
agtggatgcattcctcaagatgtaagactcgtgttagttgatcaactttatgtcctttct
gggttgagaaatgggatgctgcttcgttttgagtggccccctttttcacatacatccggg
ttgaattgtccagattattttagttattgtaaagaagagatggacattgttgtgggcaaa
agagacgatttaccaatcaaccttctgttaattgccacccgacgcattggcatcacacct
gttttcttggttccgttcagtgattcacttgattcagacatcatagctcttagtgacagg
ccatggttgttacaaacagctcgacaaagcctttcttatacttccatctcattccaacct
tctactcatgcaactcctgtatgttcgtctgaatgccctcaaggagttctttttgtttca
gagaactgtttacatctggttgagatggtgcacagcaaacggcttaatgcacaaaaattt
caccttggaggcaccccgcgaaaggttatctaccatagtgaaagcaaactattaattgtc
atgagaacggatctgtatgatacgtgtacgtctgatatatgctgtgtggacccgctcagt
gggtcagtcttatcatcttacaagctcaaacctggagaaactggaaagtcaatggagctt
gtgcgtgtgggtaatgagcatgtccttgtggttgggacgagtttgtcttctggtcctgct
atactacccagtggtgaagctgaaagtacaaaaggacgattaatcattctttccttagaa
cacactcataattcggatagtggctcaatgacaatttgttcaaaggctggttcttcttct
caacgtacatcaccttttcgtgatgttgtgggatacgcatcagaacaactatcaagcagt
agtctctgtagcagtccagatgataacagctatgatggaatcaagcttgatgaagctgaa
acatggcagttaagattggcctcttcaaccacttggccgggtatggtacttgcaatctgt
ccataccttgatcattacttcctggcgtctgccggcaatgctttctatgtatgtggtttt
ccgaacgataatcctgagagaatgaagaggtttgcggtgggaaggactcgttttatgata
acatctctgcgaacatactttactagaattgtcgttggtgattgccgtgacggtgtttta
ttttattcttatcacgaggactcgaagaaacttctccaaatatattgtgatccggcgcag
aggttagttgctgactgctttctaatggatggcaattctgttgctgtatctgatcgcaaa
gggagtatagcaatcctgtcttgcaaagatcattcagactttgaatattcaagtccggag
tccaatctgaatctaaactgtgcttatttcatgggagagattgccatggctatcaaaaag
ggttgcaacatttataaacttccagctgatgatggactgcaaagtaatggtcttagtaaa
agtattaacacagctgatgacactatcatagcaggcacgctcttgggaagtatatttgtc
tttgctcctatttcaagtgaggaatatgagctcttaaaagctgtccaagcaaagctcggg
atccatccgctgactgctcctgttctcggtaacgatcataaggagttccgaggtcgagag
aatcagtcccaagcaacaaagatattggatggtgacatgctagctcagttcttggagctt
acaaatagacagcaggagtcagttttatcgacacctcagccatcacaaagcacatcaaaa
gcaagttcaaaacaactttcttttccgcctctcatgttacaccaagttgtacagttgctc
gagcgtgtccattacgctttacactag
DBGET
integrated database retrieval system
