Capsella rubella (pink shepherd's-purse): 17893159
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Entry
17893159 CDS
T02984
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1A isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04120
Ubiquitin mediated proteolysis
crb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
17893159
04120 Ubiquitin mediated proteolysis
17893159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crb04121
]
17893159
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
17893159
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
17893159
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_11
zf-RING_16
DUF913
phiKZ_IP
zf_RING_Vps8
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
17893159
NCBI-ProteinID:
XP_006300158
UniProt:
R0GBT9
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MIRLRTYAGLSFMATLAVIYHAFNSRCQFYPAMVYLSTSKISLVLLLNMCLVLMLSLWHL
VKFVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLA
QKRVEYIETTPSVSKLSHFRIVSFMGFLLLVDSLFMYSSIRHLVQTHQASVSLFFSFEYM
ILATTTVAIFVKYVFYVTDMIMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYG
VPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMT
NAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENATSAAAGQRGLHQGSQQGTSSS
GNQGSATSSSVGVSNDNLSRHHARLQAAASAASMYGKSIVYPSAKTVAWSPGIPGTEQVS
TEPHQTRPSSYSPSPFPQHSLPSENPQAYANMSETKLEEMRKSLESHLEILRNRLHFLEK
RKPESTESTSEPDNKGKSVADAAE
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgattcgactaagaacatacgcaggcctcagtttcatggcgactttggctgtaatatat
catgctttcaacagtagatgccaattttaccctgccatggtttatttatcaacatcaaag
atcagtttggtgctgcttctcaatatgtgtttggttcttatgctcagtctctggcatttg
gtcaagtttgtcttcttgggatcccttagggaagcagaagtcgagaggctgaatgagcaa
gcttggagagagctcatggagattctctttgccattactatctttcgacaggacttctct
agtgggtttcttcctttggttgttactcttctgttgatcaaggctctgcattggcttgcc
cagaaaagagttgaatacattgagaccactccttctgtttctaagctgtctcattttcgt
attgtctcttttatgggtttccttcttcttgtggatagtctctttatgtacagttctata
cgccacttggttcagacgcatcaggcttcggtttctctcttcttctcattcgagtatatg
atcctggcgacaacaactgttgctatttttgtgaagtatgttttctatgtgactgatatg
atcatggatggtcagtgggagaaaaaacctgtttatactttctatctggagcttatccgt
gacctgcttcacctgtccatgtatatatgcttcttctttgtcatattcatgaactatggt
gtacctttgcacttgttgcgggagctctacgaaaccttcaggaacttccaaattcgtgtt
tctgattaccttcgttatcgtaaaatcacatccaatatgaacgacaggtttcctgatgca
actcctgaagaacttactgcaagtgatgctacctgtatcatatgccgtgaagagatgaca
aatgcaaaaaaactaatatgtgggcatctctttcatgtgcattgtcttcgatcatggttg
gagcgacagcaaacatgtcctacttgcagagcacttgttgtgcctcctgagaatgccaca
tctgcagccgcaggccaacgcggattacaccaaggttcccaacagggtacatcaagctca
ggtaaccaggggtctgcaacaagttcttctgttggcgtttccaatgataatttgagtagg
caccacgccaggcttcaagcagctgcttctgcagcctccatgtacgggaaatcaattgtc
tacccatctgcaaaaacagtagcttggtcgccgggtattcctggaacagagcaagtgtca
actgaaccacatcaaactcgtccttcatcctattccccgtctccatttcctcagcacagc
cttcctagtgaaaaccctcaagcctatgcaaatatgtcagagactaagctggaagaaatg
agaaaatctcttgagagccacctcgagattttgcgaaaccgacttcattttctggagaag
aggaaaccggaatccaccgagtccacaagcgaaccagataacaaaggaaaatcggttgcg
gatgcagcggagtaa
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