Capsella rubella (pink shepherd's-purse): 17893202
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Entry
17893202 CDS
T02984
Name
(RefSeq) pre-mRNA-processing protein 40B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17893202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17893202
Spliceosome [BR:
crb03041
]
Complex A
U1 snRNP components
U1 related factors
17893202
Complex B
17893202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
17893202
NCBI-ProteinID:
XP_006299213
UniProt:
R0G9A8
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MANNPQYPGIQPFQHPNASSLELPRGYDPSMNFQFRPTIQAPHSEQVTRLSSHNFQSVGR
GGTVMNIGYPPQSYAPQLLHHSLERPSQLNKVQPVPLGPPTLISQPNVSISSGASMPPPY
VQTPDISMPGFGGPRALFSYPIATSYEGSRAPTQVTGSSSHNQAQQRASISQTTAQSSIM
NPTFEQPKAAFFQPIPSQELLTDWVEHTSADGRKYFFNKRTKRSTWEKPVELMTLFERAD
AGTDWKEHSSPDGRKYYYNKVTKQSTWKMPEEMKTAREQAEKASVQGPQPGGIIDASKVL
SRSDTASTEAPTGLPSKTSTSDTSEKLALSSDWKQPASVPGSSSPVENVDGAQMIADKTS
LLCDIAETDGPSVTVTKTSAATLVKKDEISVGITGDSDDISAKTTNQGSGTAPKESQKHM
VESERLESQPEEKQIHQDNFSSNNKLEPGDVFKSLLKSANVGPDWTWEQALREIINDRRY
GALRTLGERKQAFNEFLLQMKRSAEEERLARQRKRYEEFKRMLEECVELAPSMRWSKAVT
MFEDDERFKALEREKDRRNIFEDHINELKEKERVKALEDRKRNIIEYRRFLESCNFIKSN
SQWRKVQDRLEVDERCSCLEKIDQLEIFQEYLRDLEREEEERQKIQKEELKKAERKHRDE
FRGLIDEHIATGELTAKTSWRDYLMKVRDLPVYSAITSNSSGATPKDLFEDALEDLKRKY
HDLKSQIKDVLKFRKVTLYGGSTFDEFKVSISEDISVSSISDVKLKVVFDDLLERVKEKE
EKEARKQTRQTEKLVDMLRFFKDITASSSWEESKHLVEGSERCRTIGDESFRKHTFEDYV
SHLKEQSKRMKQHKKVPEDVRDEHDKGKDKYGREKDRVRERDSDDHHKKGAADNHNHDMN
EPHGRERRRSGRDSYNRHRERHTSVKESETDHLKESHKAGGGHKKSREQRGLVPEAEDEG
REKRRRKEEESEKTKVEELEDGECGRY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggctaataaccctcagtatcctggcattcagccattccagcatcctaatgcgagttcc
ttagaattaccccgaggctatgatccatccatgaactttcagtttcgtcctaccattcaa
gctccgcattctgagcaagttactcgattgtcttctcataactttcaatctgttggcaga
ggtggcacagtgatgaacattggatatccacctcaatcttacgcacctcagttattacat
cattcccttgaaagacctagccaattaaataaggtgcaacctgtgccacttggaccccca
actctaatttcacagccaaatgtgtcaatttcttctggtgcctccatgcctccgccttat
gtgcaaactccagatattagtatgcctggttttggagggccaagggcactcttttcttat
ccgattgcaacatcttacgaaggttcgagggcaccaactcaagtcactggatcaagcagt
cataatcaggcacaacagagagcatctatcagccagacaactgcacaatcttctatcatg
aatccgacatttgaacaacctaaggcagctttttttcaacctatcccttctcaagagctt
ctaacagattgggttgagcatacctctgcggatggaaggaaatattttttcaacaagagg
acaaagcggtccacttgggagaagcctgttgagttgatgactctttttgagagagcagat
gcaggaactgactggaaagaacattcaagtcctgatggaagaaagtattactacaataaa
gttaccaagcaatcaacatggaaaatgcctgaagagatgaagactgcgcgtgaacaagca
gaaaaagcatctgttcaaggacctcagccaggaggcattattgatgcttctaaggtgctg
tctcgttctgatactgcatcgactgaagctcctactggtctaccaagcaaaacatcaacc
tctgataccagtgagaaactagctctttcttctgattggaagcagccagcttcagttcct
ggaagttcttctccggtcgaaaatgttgatggagctcagatgattgcagataaaacatca
ctattgtgtgatattgcagaaactgatggtccttctgtcactgtgacgaaaacttctgct
gctacattggttaagaaggatgaaatttcagttgggatcactggagattcagatgacata
tcagctaaaaccacaaatcaaggtagtgggactgcaccaaaagaaagccaaaaacatatg
gtggaaagtgaaagacttgagagccaaccagaagaaaaacaaattcatcaagataatttt
tctagtaataataaattggaacccggggatgtattcaaatcacttttaaaatccgccaat
gttggacctgactggacatgggaacaggccttgagagaaattattaatgacagaagatac
ggtgcgctaaggactcttggagagcggaagcaagccttcaatgagttcttacttcaaatg
aaacgatcagctgaagaggaaaggctagcgagacagagaaaacggtatgaagaatttaaa
aggatgttagaggaatgtgtggagcttgctccttcaatgcggtggagcaaggctgtgaca
atgtttgaagacgatgagcggttcaaagctcttgaacgagaaaaagaccgtcgtaatatt
tttgaagatcacatcaatgagctaaaggagaaggagcgggtgaaagctcttgaggatcgc
aagcggaacataattgaatacagaagatttttggaatcttgcaatttcatcaagtctaat
agtcaatggcgcaaagttcaggaccgcctagaagtggatgaacgatgttcatgccttgag
aaaattgatcagctggaaatctttcaggaatatctgcgtgatctagagagggaagaagag
gagagacagaagatacagaaggaggagctaaaaaaagcagagagaaagcatcgtgatgag
ttccgtgggctgatagatgaacatattgcaacaggagagcttactgccaaaaccagttgg
cgtgattatttaatgaaggtcagagatttaccagtatattcagcaattacctcgaattca
tctggagctactccaaaagacttatttgaagatgcgcttgaggatttgaaaagaaagtat
cacgatctcaagtctcagataaaggatgtattgaagttcagaaaggtaacattatatggt
ggatcgacatttgatgagttcaaggtctccatttccgaggatatcagtgtctcatctatt
tcagacgttaaactaaaggtagtttttgatgatttgctggaaagggtaaaggagaaggaa
gaaaaagaagccagaaaacagacacggcagactgaaaaattggtggatatgcttcgcttt
tttaaggatataactgcctcttcatcctgggaggaatcaaagcatctagttgaaggtagt
gaaagatgccgtactattggcgatgagagcttccggaagcatacatttgaagattatgta
tcacacctcaaagagcaatcaaaaaggatgaaacagcacaagaaggtacccgaggatgtg
agagatgaacatgacaaggggaaagataaatacggaagagaaaaggacagagtccgagaa
agagacagtgatgatcatcataagaaaggtgcagctgataatcacaaccatgatatgaat
gaaccccatggaagagaacgtagaagatcaggaagagatagctataacagacatcgagaa
agacatactagtgtgaaggaaagtgagacagaccatctcaaagaatcccataaggctggt
ggtggccacaagaaatcaagagaacagcgaggtttggtccctgaagcagaggatgaaggc
agggaaaagcggcgtagaaaagaggaagagagtgagaaaacaaaggtagaggagcttgaa
gatggagaatgtggtaggtattga
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