Capsella rubella (pink shepherd's-purse): 17893384
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Entry
17893384 CDS
T02984
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
17893384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crb03400
]
17893384
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
17893384
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
17893384
NCBI-ProteinID:
XP_006296868
UniProt:
R0G354
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MQRQRSILSFFQKPSPATASTQGLVSGDATSGGGGGGGGGGLRSTVKGGDGNGDASVRPA
VSKSVDEVRGTDTPPEKVPRRVLPSGFKTTAESAGGGASSSLFSNIMHKFVKVDDRDCPG
QRSREHVVPLDDSSVCVKDDNVFPEFRSNKCQSQERGHAFSFSGRANIRLVEDIEVDDDV
PGPDTPGMRPSVPRFKRVLEDGMNSKENKVPVLDSNKRLKMLQDPVCGEKKEVNEGTKFE
WLDPSRIRDANRRRPDDPLYDRKTLYIPPDVFKKMSASQKQYWSVKSQYMDIVLFFKVGK
FYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRIEQLET
SDQAKARGANSIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELEKCSTVYGFAFV
DCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKFTLTGSTAVQ
LAPVPQVMGDTDAAGVRNIIESNGYFKASSQSWNCAVDGLNECDVALSALGELINHLSRL
KLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNTCDGGPSGTLYKYLDNCISPTGKR
LLRNWICHPLKDVVTINKRLDIVEEFKANSEIMQITGQYLHKLPDLERLLGRIKSSVQSS
ASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLCKLCKLPILVGKS
GLELFLSQFEAAIDSDFPNYQNQDMTEENAETLTILIELFIERSTHWSEVIHTISCLDVL
RSFANVASLSAGSMARPVIIPESNSSNQNQEIKGPILKIQGLWHPFAVAADGQLPVPNDI
LLGEASSSSNSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCETCELSLVDTI
FTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFR
HLVEKVQCRMLFATHYHPLTKEFSSHPRVISKHMACAFKSRTDQEPRGCDKDLVFLYRLT
EGACPESYGLQVALMAGIPNQVVETATDAAQAMKRSIGESFKSSELRSEFSSLHEEWLKS
LVCISRTTNTIVEDEEDEEDDYDTLFCLWHELKSSYSVPQLKSMT
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagagatcgattttgtctttcttccagaaaccgtcgccggcgacggcgagt
actcagggtttggtttcgggagatgctactagcggcggtggcggcggcggaggaggagga
gggttacgatctactgtgaagggaggggatggtaacggcgacgcttcggtacgccctgct
gtatcgaaatctgttgatgaggttagaggaacggatactccgccggagaaggttccgcgt
cgtgtcttgccgtccggatttaagacgacggctgaatccgccggaggtggtgcttcgtcg
tcgctgttctctaatattatgcataagtttgtgaaggtcgatgatcgagattgtcctgga
cagaggagccgagaacatgttgttccgcttgatgattcgtccgtatgtgtgaaggatgat
aatgtttttcctgaatttcgttccaataaatgtcagtctcaagaaagaggacatgctttt
agcttcagtgggagagctaatataaggctagtagaagatatcgaagtagatgatgatgtt
cctggtccagatacaccagggatgcgtccaagtgttcctcgttttaagcgagttttggag
gacggaatgaattctaaggagaataaggtccctgtattggattctaacaaaaggctgaaa
atgcttcaagatccagtttgtggagagaagaaagaagtaaacgaaggaaccaaatttgaa
tggcttgacccttctcgaatcagggacgccaatagaagacggcctgatgatcccctttat
gataggaagaccttatacataccacctgatgttttcaagaaaatgtctgcatcgcaaaag
caatattggagtgtcaagagtcagtatatggatattgtcctgttctttaaagtgggaaaa
ttttatgagctgtatgagctagatgcagaattaggacacaaggagcttgactggaagatg
accatgagcggtgtgggaaaatgcagacaggttggcatctctgaaagtgggatagatgag
gcagtgcaaaagctgttagctcgtggatataaagttggacgaattgagcagctagaaaca
tctgaccaagcaaaagccagaggtgctaatagtataattccaaggaagcttgttcaggtg
ttaactccatcaacagcaagtgagggtaacatcgggcctgatgccgtccatcttcttgct
ataaaagagatcaaaatggagctagaaaagtgttcaactgtgtatggatttgcttttgtt
gactgtgctgccttgaggttttgggttgggtccatcagcgatgatgcatcttgcgctgct
cttggagctttattgatgcaggtttctccaaaggaagttttatatgacagtaaagggcta
tcaagagaagcccaaaaggctctaaggaaatttacattgacagggtctacggcggtacag
ttggctccagtaccacaagtgatgggagatacggatgctgctggagttagaaatataata
gaatctaatggatactttaaagcttcttctcaatcatggaactgtgctgttgatggtcta
aatgaatgtgatgttgcccttagtgcccttggagagctaattaatcatctgtctaggcta
aagctagaagatgtacttaagcatggggatatttttccataccaagtttataggggttgt
ctcagaattgatggccagacgatggtaaatcttgagatatttaacaatacctgtgatggt
ggtccttcagggaccttgtacaaatatcttgataactgtattagtccaactggtaagcgg
ctcttaaggaattggatctgccatccacttaaagatgtagtaaccatcaataaacggctt
gatatagttgaagagttcaaggcaaactcagaaattatgcaaatcactggccagtatctc
cataaacttccagacttagaaagattgctcgggcgcattaagtctagcgttcagtcatca
gcctctgttttgcctgctcttctggggaaaaaagtgctgaaacaacgagttaaagcattt
gggcaaattgtgaaagggttcagaagtggaattgatttgttgttggctctacagaaggaa
tcaaatatgatgagtttgctttgtaaactctgtaaacttcctatattagttgggaaaagt
gggttagagctattcctttctcaattcgaagcagccatagatagcgactttccaaattat
cagaaccaagatatgacagaggagaatgctgaaactctcacaatacttattgaattattt
atcgaaagatccactcactggtctgaggtcattcacaccataagctgccttgatgtcctg
agatcttttgcaaacgttgcaagtctctctgctggaagcatggcccgacctgttatcatt
cccgaatcaaatagttcaaatcagaatcaggaaataaaagggccaatacttaaaatccag
ggactatggcatccatttgcagttgcagctgatggtcaattgcctgttccaaatgatata
ctccttggtgaggctagcagcagcagcaacagcattcatcctcggtcattgttactgaca
ggacccaacatgggtggaaaatcaactcttctgcgtgcaacatgtcttgctgttatcttt
gcccagcttggttgttatgttccttgtgagacatgtgaactctcccttgtggatactatc
ttcacaaggcttggcgcatctgatagaatcatgactggagagagtaccttcttagtagaa
tgcactgagacggcgtcagttcttcagaatgcaactcaggattcactagtaatccttgac
gaactgggcagaggaactagtactttcgatggctacgccattgcatattcagtttttcgt
cacctggtagagaaagtccagtgccggatgctcttcgcaacgcattaccaccctctcaca
aaggaattctcgtctcacccacgcgtcatctcaaaacacatggcttgcgcattcaaatca
agaacagatcaagaaccccgtggttgtgataaagacctggtgttcttgtaccgtttaacc
gagggagcttgtcccgagagctacggacttcaagtagccctcatggctggaataccaaac
caagtcgttgagacagcaacagacgctgctcaagccatgaagagatcaattggagaaagc
ttcaagtcaagtgagctaaggtctgagttctcaagtctgcatgaagaatggctcaagtca
ttggtgtgtatctctcgaactaccaatacaattgtcgaagatgaagaagatgaagaagat
gactacgacacgttgttttgcttatggcatgagctcaaatcatcttactctgttccccaa
ctaaagtcgatgacgtaa
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