Capsella rubella (pink shepherd's-purse): 17893549
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Entry
17893549 CDS
T02984
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17893549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17893549
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17893549
mRNA degradation factors
5'-3' decay
Decapping complex
17893549
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
17893549
NCBI-ProteinID:
XP_023642515
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MASSPGNTNPHNPPPFDLGILFKPSSNPYPAPPASYPPPTGPFLHNQYDQQHYALPAISA
QPSPVTQAQQDVSSSSLATNLHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNNNGGA
VANQEPSHQPPLVNHNEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQ
PQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVT
DMAFFAEDVDMLASVSLDGKVFVWKISEGSEGDDQPQITGKIVCALQILGEQDTKHPRVC
WHCHKQEILVVSIGRHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTD
LSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILI
TGGPLNREMKIWVSAGEEGWLLPADSESWRCTQTLALKSSTESRAEEAFFNQVIALSEAG
LLLLANAKRNALYAVHLDYGNSPVETRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYCV
QTLAIQQYTLDLSLCLPPPVENMGLEKSDSNVSREANLVESTSEPSGLKPTDLPSVDSVP
KPSIIVNRSESANKLSFTSAEATAQAIVPPNGEPKTSALPSETSGAGSAYATSPKLPLSP
RLSRKLSGYHSPVDAIEPVTPHHELGGRAPSADYSVDRQMDAVGVSSCDVSSIEENSRSK
DPNVTPDDDLSGMRSPAAFFKHPTHLVTPSEILMGVSSAEASTTNEDRRDRDANNFQDVN
NDARGAEVEVKEVSDTRSTQNGETNDNDETANRTSENREKVFCSQVSNLSTQMARDCYPS
TEGTFIPGESKAYGEPIQAGDESGLDTRGVSAKLPESGSSSGLQQSSAANSKGKKQKAKN
SQGPSLSSSSSNLAESFNEQRESLSHPMTDPLPQFLAMQEXMNQIMASQKEMQRQLSNAV
TGPIVKESKRLEVALGRMIEKSSKSNADALWARFQEETAKNEKALRDHSQQIVSATTNFM
SKELNAMFEKTIKKELAAIGPALARSVTPVIEKTVSSAITESFQRGIGDKAVNQLEKSVN
LKLEATIARQIQAQFQTSGRQALQEALRSGLESSVIPSFERACKTMFDQMDSAFQKGIAE
HTNAAQQRLDSGHSQLAHTLRETITSASSVAQALSRELAENQRNFLALAAAGANSGGSNP
LITQLSGGPLGALLEKAEAPKDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVD
LRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLGWMTDVVAAINPSDQMIAVHARPI
FEQVYQILHHHRNAPGSDVSAIRLIMHVINSMLMGCK
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttctcctggtaataccaatcctcacaatcctcctccgtttgatctcggtatt
ctcttcaaaccttcatccaatccttacccggcgccgcccgcatcttatcctccccccaca
ggtccatttcttcacaaccagtacgatcagcagcactacgctctgcctgctatatccgct
cagccatcgccggtcactcaggcgcaacaggatgtctcttcctcttccttggcgactaac
ttgcacccacagagaacgctctcttatcccacgccacctctcaatctccaatctccccgt
tccaatcacaatcctggaacgcacatcctcgctctcctcaacaacaacaacggaggcgcc
gtggctaaccaagagccatcccatcaacccccgttagtgaatcacaacgagatcgcgcgt
tctttccccggtggttcgggtcctattcgtgtcccgagctgtaagcttcccaaaggaagg
cgattgattggtgaacacgccgtgtacgatgtagatgtgagattacaaggggagattcag
ccacagctggaggtgactccgattaccaaatacggttcggatcctcagctagttgtgggt
cggcaaatcgcagtgaataaggtctatatatgctatggattgaaaggaggaaacattagg
gttctcaatataaacacagcattaagatctctgttccggggccattctcagagagtgacg
gatatggctttctttgccgaggatgttgatatgttggccagtgttagtctagatggaaaa
gttttcgtgtggaaaatttctgaaggatctgagggagatgatcaaccccagataactgga
aagatagtttgtgctctacagattctaggagagcaagacaccaaacatccacgtgtttgt
tggcactgccacaaacaggaaattttggtagtttctattggtagacatgtgctgcgaatt
gatactacaaaagttggcagaggtgaagtattctctgctgaggcacctctccagtgtccc
cttgataagctgattgatggtgtccagattgtgggtaaacatgatggagaagttacagat
ttgtcaatgtgccaatggatgaccacgcgcctggtttcttcttctgttgatggcacgatt
aagatatggcaagatcgtaaagcacaaccacttgtagttttgaggcctcatgatggacat
ccagtcagttcagccacgtttgtgacatctcctgagagacctgatcacatcatacttatc
acagggggtcctctcaatcgagaaatgaaaatctgggtctctgctggagaagaagggtgg
cttctaccagctgattctgaatcatggaggtgtactcagacacttgccttgaaaagttca
actgagtcacgggctgaagaggcattttttaatcaagtcatagcattatctgaagcaggc
ttgcttttacttgcaaacgcaaaaaggaacgccttatatgctgtgcatttggactatggt
aactcccctgttgaaacgcggatggattacctgtcagagtttacagtcactatgcccata
ttgagttttattgggacaaatgatcctccagaagagcccattgttaaggtttattgtgtt
cagactctagcaattcagcagtatacattagacttgagcttgtgcttgccaccacctgta
gagaatatgggtttggagaagtcagattctaatgtatcgcgagaggcaaaccttgttgaa
agcacgtcagaaccatctggactgaaacctacagacttaccttcagttgattcagtgcca
aaaccttctattatagtgaatagatcggaaagtgctaataagttgagttttacatccgcc
gaagccacagcacaagcaattgttccacccaacggtgaaccaaaaacttctgccttgcca
tctgagaccagtggtgcaggttctgcgtatgctacgtcacccaaacttcctctaagtccc
agactatcaagaaaactttctggctatcacagtcctgtagatgctattgagccagtaaca
cctcatcatgagcttggtggcagagcaccttcggctgactattctgttgataggcaaatg
gatgctgttggagtaagtagttgtgatgtgtcatccatagaagaaaattcaagaagcaag
gacccaaatgttacacctgatgatgatttgtccgggatgcgaagcccagcagcctttttc
aaacaccccactcatcttgtaactccttcagagatattgatgggcgtttcgtctgctgaa
gcctccaccaccaatgaagacaggagagatagagatgcaaataattttcaggacgtgaat
aatgatgcaagaggtgcagaagttgaggtgaaagaagtaagtgacacaaggtcaacacag
aatggtgaaaccaatgataatgatgaaactgcgaatcgcacttcagaaaatagagaaaaa
gtcttctgctcacaggtttcaaatctcagcacccagatggcaagagactgttatcctagt
acagaaggaactttcataccaggggaatctaaggcttatggagaacctatacaggctgga
gatgaaagtggtcttgacacgagaggtgtgtctgcaaagcttcctgagtcgggttcatct
agtgggcttcaacagtcgtcagctgcaaatagcaaagggaagaagcagaaggccaaaaat
tcacagggtcccagtctgtcatcttcatcctcaaatctggctgaatccttcaatgagcaa
cgtgagagcttaagtcatcccatgacagatccacttcctcagttcctagctatgcaagaa
nncatgaatcagataatggcttcgcagaaggagatgcagagacaactatcaaatgctgtc
actggccctatcgtaaaggaaagtaaaagactagaagtggcgttagggagaatgattgag
aaatccagcaagtcaaatgctgatgctctatgggctcgcttccaagaggagactgctaag
aatgaaaaggcattgcgtgaccattcacagcaaattgtgagtgcaacaacaaacttcatg
agcaaggagttaaatgccatgtttgagaaaacgataaagaaggaacttgctgcaattggt
ccagcccttgcacgttcagttacaccggttattgaaaaaactgtatcttctgcaatcaca
gagtccttccagagaggaattggtgacaaagcagttaatcagcttgaaaaatctgttaat
ttaaagcttgaagcaacaatagctaggcaaattcaagcccaatttcagacctctggcagg
caagccctccaggaagcgcttaggtcgggtctagagtcctcagtcataccttcttttgag
agggcatgcaagacaatgtttgatcaaatggactcagctttccagaaagggattgctgag
catacaaatgcagcccagcaacgccttgactctggacactcccagcttgctcatacttta
agggaaacaattacttctgcatcatcagttgctcaagccttaagtcgtgaattagccgag
aaccaaaggaatttcctagctctcgcagctgctggagcaaattctggcgggtcaaatccc
ttgattactcaactaagtggcggacctttgggtgctcttcttgaaaaggctgaagcacct
aaggacccaacaactgaactttcaaggttgatatctgaacgcaagtacgaagaatctttc
acttctgctctacagagaagcgatgtctctatagtatcatggctttgttctcaggtggat
cttcgtggactattggctatgaatccacttccgctgagtcaaggcgtgcttctttcgctg
ctgcagcagctagcctgcgacataagcaaggacacatctcgtaagcttggttggatgact
gatgtggtggcagccataaacccatcagatcagatgattgcagttcacgctcgcccaatc
tttgaacaggtctatcagattctgcaccatcaccgaaacgcaccggggagcgatgtctca
gccatcagactgataatgcacgtcataaactccatgctgatgggctgcaagtga
DBGET
integrated database retrieval system
