Capsella rubella (pink shepherd's-purse): 17893715
Help
Entry
17893715 CDS
T02984
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 45
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17893715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17893715
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
17893715
Spliceosome [BR:
crb03041
]
Complex A
U2 snRNP components
U2 related factors
17893715
Complex B
17893715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
17893715
NCBI-ProteinID:
XP_023641437
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MMKSDKSKYRKEEDDDLYKSRGDRDRGKERRKEKRSEIRRSRRSEIVKRSDSQEEERIRR
RRDRTISDSEGEEQRDYKRRVKEDERGHRERERDKGKYRKRDRERREGGKDRVRSREDCN
GDRDDDIKRNLKSTRTSRHGDDCVEKKTLEEQVKDEQEQLDEEVDKRRRRVQEWQELKRQ
KEEAQSESKGLEAGKAWTLEGESDDDEKSDSAMDVDGETKPEKGEDAKTVDLENENGGYR
GADEEDIDPLDAFMNTMVLPEVVKLSNMTSPSAVNDGLLDSKMNGKESGDREKKGLNKAL
GRIIQGEDSDSDSDYSETKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRK
NFYIEVKDISRMTQDVVNAYRKELELRVHGKDVPRPIKYWHQTGLTSKTLDTLKKLNYEK
PMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPT
RELVQQIHSDIKKFAKALGVRCVAVYGGSGVAQQINELKRGTEIVVCTPGRMIDILCTSS
GKITNLRRVTFLVMDEADRMFDLGFEPQITRILQNIRHDRQTVLFSATFPRQVETLARKI
LDKPVEIQVGGRSVVNKDITQLVEIRQESERFARLLELLGEWYERGKVLVFVRSQDKCDA
LYNDLMTKCGYACLSLHGGKDQTDRESAISDFKSNVCNLLIATSIAARGLDVKELELVVN
FDPPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQLVPDDVKAVA
DGFMAKVKQGIEQAHGTGYGGSGFRFNEEEEEVRKAAKKAQAKEYGFEEEESDSEDENDV
VRKNGSDILQQQATLSQIAAIAAAAEAAMTANQLPPNGGGIVTVAGVPPSDGAGRVAAMV
AAANLQHNLARIQADGMPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGAAITIRGQ
YHEPGRIPGPGERKLYLFVEGPTEISVKTAKSELKRVLEDITNQAFSLPGGAQPRRYCVL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagtcggataaatcaaagtacagaaaggaagaagatgatgatttgtacaagtct
cgcggagaccgtgatcgcggtaaggagcggaggaaggagaaacgttcggagatcaggcgc
tcgagacggtctgagatagttaagagaagtgattctcaagaagaggagaggatacggaga
cggagggataggacgattagcgattctgaaggagaagagcagagggattacaaacgcaga
gtaaaggaggatgaaagaggacaccgtgaacgtgagagagataagggcaaatatcggaaa
agggatagagagaggagagaaggtgggaaagacagggttaggtcacgagaggattgtaat
ggagatagagatgatgatatcaagcgtaacttgaaaagcacaagaactagcaggcatgga
gatgactgtgttgagaagaaaaccctggaagaacaagtaaaggatgagcaggagcagttg
gatgaagaagtagacaaacgtaggagaagagtccaggagtggcaagagctgaagaggcaa
aaggaggaagctcaaagtgaaagtaagggtcttgaggcaggtaaggcttggactcttgaa
ggagaatctgatgatgacgagaaatcagactcagcaatggatgttgatggagagactaaa
cccgagaaaggtgaggatgccaagacggtagacttggagaatgagaatggaggttacaga
ggtgcagatgaagaggatattgatcctttagatgcttttatgaatactatggtattacct
gaggttgtgaagcttagcaatatgacttctccctcagcagtgaacgatggtcttttggat
tctaaaatgaatgggaaggaaagtggtgaccgggaaaagaaaggtttgaataaggccctt
ggaaggataattcaaggtgaagattctgattcagattctgattattcagaaacaaagaat
gatgatgatccaagtttagacgaagacgatgaggagttcatgaagagagttaagaagact
aaagcagagaaactgtctcttgttgaccactccaaaatagagtatgagcctttccggaag
aacttctatatcgaagtcaaggacatctcaaggatgacacaggatgtagttaacgcttat
agaaaggaattggagctaagagtgcatgggaaagatgtaccaagacccatcaaatattgg
caccagactggactgaccagcaaaactttggatactttgaagaaacttaactatgaaaag
ccaatgcctatccaagcacaagcactcccaatcataatgagcggtcgagactgcattggg
gttgcaaaaactgggtcaggtaaaaccctcggctttgttttgccaatgttgaggcatatc
aaagatcagcctcccgttgaagctggtgatggaccgattgggctggtgatggcaccaact
agagaacttgttcagcagattcacagtgatatcaaaaagtttgctaaggcattgggtgta
agatgtgtggctgtgtatggaggatcaggagttgcccagcaaatcaatgagcttaagcga
ggtactgagattgttgtttgtactcctggcagaatgatcgatattctctgcacaagcagt
gggaaaataaccaatctgcgaagggtcacatttctggtaatggatgaagctgaccgtatg
tttgacttgggttttgagcctcaaattacgcgtattcttcaaaatattcgacatgatcgt
caaactgtgctcttctctgccacttttccacgccaagttgaaactttggcacgtaaaatc
ttggacaagcctgtggaaatacaggtcggtgggaggagtgttgtgaataaagatataact
cagttagttgaaatcagacaggagagtgagaggttcgcaagacttttggaacttcttggg
gaatggtatgagagaggaaaagttctggtgtttgttcgttcacaggacaaatgtgatgct
ttgtacaatgatttgatgaccaaatgtggttatgcatgtctatctcttcacgggggtaag
gaccagactgatcgtgaatcagctatatctgattttaagagcaatgtatgcaatttgttg
attgccacaagtattgcagccaggggtctagatgtgaaagagcttgagttggttgttaac
tttgatccgccgaaccactatgaagactatgtgcatcgtgttggcaggacaggtagggca
gggcggaaaggctgtgctgtaacatttatctccgaggatgatgcaaaatatgcaccagat
ttagtcaaggccctggaactatctgagcagcttgttcctgatgatgtaaaagcagtggcc
gatgggttcatggcaaaagtgaaacagggtattgagcaagctcatggaactggctatggt
ggcagtggctttagattcaatgaagaggaggaggaagtcaggaaagcagcaaagaaagca
caagcgaaggagtatggctttgaggaagaggagtctgattcagaagatgagaatgatgta
gtaagaaagaatggtagtgatatcttgcagcaacaagctacgctttctcagatagccgcc
attgctgctgctgctgaagctgctatgactgctaaccaattgccacctaatggtggtggg
attgttactgtggcaggtgtccctcctagtgatggagcaggccgcgttgcagccatggtt
gctgccgctaacctgcaacacaaccttgcaaggattcaagctgatgggatgcctgaacac
tatgaagcagaactggaaatcaatgatttcccacagaatgctcggtggaaagttacccac
aaagaaacgcttggtccaatatcagagtggagtggagccgctattaccattagaggtcag
tatcatgagccaggacgtatcccgggacctggggaacgcaagctctatctgttcgttgaa
gggcctaccgaaatatctgtaaagacagctaaatctgaactcaagcgtgttcttgaagac
ataactaatcaagccttctcccttcctggaggagcacaacctagaagatactgtgtccta
taa
DBGET
integrated database retrieval system
