Capsella rubella (pink shepherd's-purse): 17893806
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Entry
17893806 CDS
T02984
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17893806
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
17893806
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Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
17893806
NCBI-ProteinID:
XP_006296610
UniProt:
R0HZM8
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MIYMKKKNTWFLNFSLFILQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAICSGTGD
GQLVVPAGMTFMLQPLRFQGSCKSAPIFVQILGNLVASSKGNWKGDKDQWIMFADIEGLV
VEGDGEIHGQGSSWWEHKGSRPTALKFKSCNNLRLSGLTHLDSPMAHIHINDCNYVTISS
LRINAPESSPNTDGIDIGASSNVVIQDCVIATGDDCIAINSGTSNIHISGIDCGPGHGIS
IGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFHGITLDNVENPII
IDQLYNGGDSDKAKDHKSSAVEVSKVVYSNFIGTSKSEYGVDFRCSETVPCTEIFLRDVK
IETASSGSGQVAQGQCLNVRGVSTLAVPGLECLSLTTDMLSSPQLPEQTCMLAQSGQPRT
QPMQDPIWDYESRGKRLVVSNAILISFVSLVTYIFR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgatatatatgaagaagaagaacacttggttcttgaatttctcactgttcattctccaa
atcttcacatcttcgaatgcattggatgttactcagttcggagcggttggagatggagtt
acagacgattcacaggcgttcttgaaagcttgggaagctatctgtagcggaacaggagat
gggcaacttgtcgtgccggcagggatgacttttatgttacaacccctgaggtttcaaggt
tcttgcaaatcagcccctatttttgttcagattttaggcaatcttgtagcatcgagtaaa
ggaaattggaaaggagacaaagatcaatggattatgtttgcagacattgaaggacttgtg
gttgaaggtgacggcgaaattcacggccagggttcgagctggtgggaacacaaaggctcc
agacctaccgccttgaagttcaagagctgcaacaaccttagattgagtgggttaacacac
ttagatagtccaatggctcacattcacatcaacgattgcaactacgtgaccatctcaagt
ctccggataaatgcgccggaatcaagtcctaacactgatggaatcgacataggcgcttcc
tccaacgttgtcatccaagactgcgtcatcgcaaccggtgatgattgcatagcgataaat
tcggggacgtctaacatccatatttccggtatagactgcggaccagggcatggaataagc
ataggaagcttgggtaaagatggggagacagctaccgtggagaatgtttgtgtccaaaac
tgtaacttcagaggaactatgaatggggctcggatcaaaacctggcagggtggatcgggt
tacgcgagaatgattactttccatggaataactctagacaatgtcgagaatccaattata
atcgatcagctctacaacggaggagattctgataaagccaaagatcataagtcttcggca
gtggaagtgagcaaagtggtgtatagtaatttcattgggacatcgaagtcagaatacgga
gttgatttcaggtgcagcgagactgtaccgtgcacggaaattttcttgcgagacgtgaaa
atagaaaccgcatcatcaggatcaggacaagtcgcacaaggacagtgtttaaacgtgaga
ggtgtgtccacacttgctgtcccaggtctagaatgcttatcacttaccacagatatgttg
tcatcgccgcaattgccggaacaaacttgcatgttggcacaatcaggacaaccaagaaca
caaccgatgcaagatccaatatgggattatgaaagcagagggaaacgacttgtagtatcc
aatgcaatattaatttcatttgtgtccttggttacatacatttttaggtaa
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