Capsella rubella (pink shepherd's-purse): 17893880
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Entry
17893880 CDS
T02984
Name
(RefSeq) probable pectate lyase 7
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17893880
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17893880
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
HD-ZIP_N
Motif
Other DBs
NCBI-GeneID:
17893880
NCBI-ProteinID:
XP_006299938
UniProt:
R0GB74
LinkDB
All DBs
Position
Unknown
AA seq
472 aa
AA seq
DB search
METARLLKLVCVICIASFIPTIRANVPETDEYWVNKANEARKHTLMAYHPDPYDIVDHFH
ERHYDNSTDVEETEEDKAVDSAEEEDIEMISSPTNSTRRSLSGKRRGRGKWSKLRGPCTA
SNPIDKCWRCQPDWAKRRKKLVHCVRGFGYKVTGGKRGRIYVVTSPRDDDTVNPRPGTLR
HAVIQKEPLWIIFKHDMSIRLSQELMIASHKTIDARGSNVHIAYGAGITIQYVHNIIIHG
LHIHHIVKSSGGLIRDSINHFGQRGQADGDGISIFGATNIWLDHISMSRCQDGLIDAIMG
STAITISNSHFTHHNDVMLLGAQDNNQDDKKMQVTVAYNHFGKGLVQRMPRIRWGFVHVV
NNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKPHYREVTKRDYASEGEWKHWNWRSEKD
YFLNGAHFRESGNPHFKCSHSRQQMIKPKHGVAVSKLTKYAGALDCRVGKAC
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggagacggctaggcttttgaagttagtgtgtgtgatttgtattgccagtttcattccg
accatacgagccaatgttcccgagaccgatgagtactgggtaaataaggccaacgaagct
cgtaaacatacccttatggcttatcatcctgatccttatgatatcgtcgaccacttccac
gagcgtcattacgacaactctaccgatgtcgaagagaccgaggaagacaaggcggtcgat
tctgcggaagaggaagacattgagatgatttctagtccgacaaacagcacaaggcgcagc
ctaagcggtaagcgcaggggaagaggaaaatggagcaagctaaggggaccttgcaccgca
agcaaccccattgataaatgctggcgttgtcagcccgactgggccaagcgtcgcaagaag
ctcgttcattgcgtccgtgggtttggttacaaggtcacgggaggcaaacgcggtcgcatc
tatgtggtcacgagccccagagacgatgatacggtgaaccctagacctgggacactacgt
cacgctgtgatacaaaaagaaccgctctggatcatattcaagcacgatatgagcattagg
ttaagccaagagctgatgattgctagtcacaagacgatcgatgctcgtggctctaacgtg
cacatcgcatatggtgcgggtatcacgatacagtacgtgcacaatatcatcatccatggg
cttcacatccatcacattgtgaaaagcagtggcgggttgataagagattcgatcaaccac
tttggacaaagaggacaggctgatggagatgggatctccatctttggggcaaccaacatt
tggcttgaccacatttctatgtccagatgccaagatggcctcattgacgctataatgggc
tcaaccgcaatcaccatctctaactctcatttcacccatcacaacgatgtgatgttgctc
ggtgcacaagacaacaaccaggatgacaagaagatgcaagtcacagtggcttacaaccat
tttggtaaaggacttgtgcagaggatgcctaggatccgatggggattcgtccatgttgtc
aacaacgactacactcattgggagctttacgccattggaggtagccaaggtcctaccatt
ctcagccatggaaaccgtttcatcgctcctcctcacaaaccccattacagagaggtgaca
aagagggattacgcttcagaaggtgaatggaaacactggaactggagatccgagaaagat
tatttcttgaacggagcacacttcagagagtctggaaatcctcatttcaagtgttcgcac
tctaggcaacagatgataaagcccaaacatggtgtcgcggtttcaaagcttaccaaatac
gccggagcattggattgccgggtcggaaaagcatgctaa
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