Capsella rubella (pink shepherd's-purse): 17894338
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Entry
17894338 CDS
T02984
Name
(RefSeq) transcription initiation factor TFIID subunit 2
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
17894338
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
crb01002
]
17894338
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17894338
03036 Chromosome and associated proteins [BR:
crb03036
]
17894338
Peptidases and inhibitors [BR:
crb01002
]
Metallo peptidases
Family M1
17894338
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
17894338
Coactivators
SAGA/TFTC/STAGA complex
17894338
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
17894338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
17894338
NCBI-ProteinID:
XP_023642958
LinkDB
All DBs
Position
Unknown
AA seq
1394 aa
AA seq
DB search
MAKAKKPKNEEAPGAKTSENTGAKVLHQKLALSIDFQKRQIYGHTELEVSVPDIGIVGLH
AENLGIESVLVDGEPTVFEYYPHHQNSENESNWNSVSDPASAADAAAMEYVGVLKREDTA
NLLINCCKPSKDLSEQLDNVALENGSQSSGDAKQNVKLIRINYWVEKKESGIHFDENIVH
TDNQMRRARCWFPCIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTRKTYVYE
LAIPIAPRWVSLVAGPLEVHPDQNNFLISNLCLPYDLSRLRNTMEFFHEAYSYYEDYLSS
NFPFGFYKQVFLPPEMVVSSSTLGASLSVFSSHMLYDERVIDQTIDTRSKLASALAKQWF
GVYITPESPNDDWLLEGLAGFLTDMFIKQFLGNNEARYRRYKANCAVCKADDSGAMCLSA
SPSCKDLFGTHSIGMLGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSIRS
LSTKEFRQFANKIGNLERPFLKEFFQRWVASCGCPVLRIGLSYNKRKNIVEMAALRECTA
SLDARLSVIGATSDSENRDVDVGWPGIMSIRVYEIDGMSDHPKLPMTGDRWQLLELPCHS
KLAAKRYQKPKKGGKPDGAEENVDAVVQLENKTSIESPLAWIKADPEMEYITEIQLHQPL
QMWVNQLEKDGDVVAQAQAIASLEALKQHSFSIVNALNNILTDSKVFWRVRIGAAFALAK
TASEETDWAGLQHLIKFYKSRRFDAEIGLPKPNDFRDFPEYFVLEAIPHAIARVRGAEGK
SPREAVEFILQLLKYNDNSGNPYSDVFWLAVLVQSVGDLEFCQQSLTFLAPLLKRIDRLL
QFDRLMPSYNGILTISCIRTLAQTALKLSDSISFEHICKLIEPFRNLETILQVRVEASRA
LLDIEYQSKGISSALLLFKKYVVEESSLRGQVKLCVHMMRLCQIAVGYDSDDCVDTVSLL
DLLHLFKSHVVFNNECLRHYLFCIFQILAGRPPTLFGVPKEKPLQLVDVEACIEPKNVYL
VPGAEAAGSSLLPLGDAKGKSLDVAPFGFPVRSQEMFMPIVSELKSPEPVAAYETQHLEP
RMESQNQPLHENLIVHEMPPDSVAPTEELANKEANSSIKEPQKEPDVVSVSVSHEVKKSV
IRIKVRPSGATSRAEGSARSIERSQGIVVRHDIDRGQTSSASVDAPQRISTDAVSISNQN
HVEEVNSCHDVGSRMTASIGSVKFVSEGDTFGKELQCTAESGKTSASQKVDTSIQIAAPS
FIPVDHSMENEAQQKYASLQTLSVGKENDKKKDKEKKEKKRKREDPVYLEKKRLKKEKKR
KEKEMAKLVSSSSDPAKLVSSSSDPATKKKIESVTEAKVEEPRDGAVLVKVETEADRPLP
KFRIKLKGKAFNNS
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggctaagaagccgaagaacgaggaagctcctggcgcgaagacttccgagaac
actggagctaaagttcttcaccagaagctcgctctttctatcgacttccaaaaacgccaa
atctacggtcacacagagttagaggtgagtgtgccagatattggtatcgtgggactacac
gcggagaacttgggaattgagagtgttttggtagatggggaacccactgtctttgagtac
tatccgcatcatcagaactctgaaaatgagagtaactggaactcggtctctgaccctgct
tcagcagctgatgctgcggctatggaatatgtcggggttcttaagagagaagacaccgca
aatttactgattaactgttgcaagccctctaaggatttatctgaacagctagataacgtg
gctttagaaaatggttcccaatcatccggagacgcaaaacagaatgttaaattgattcgg
attaactactgggtagagaaaaaagagtcaggaattcattttgatgagaacattgtacat
accgataaccagatgagacgagctcgctgttggtttccttgtatagatgatgagtaccat
cgttgcagtttcgatttggaattcactgttccacacaactttgtggctgtcagtgttgga
aaattactttaccaggttatgtgcaaagaagatactactcgaaaaacttatgtatacgaa
ctagctattcctatcgctccccggtgggtgtctttagttgcgggaccattggaagtccat
ccagatcagaacaactttctcatatctaacttgtgtttgccgtatgatctctcgaggctt
cgtaatacaatggaatttttccatgaagcttatagctactatgaggattatttaagctcg
aactttccatttggattctacaagcaagtctttttacctcctgaaatggttgtttcctcg
tcgactttgggagcttccttgagtgtctttagctcccacatgttatatgatgagagggtt
attgatcagacaatagatacacgtagtaaacttgcttctgcattagcaaaacagtggttt
ggggtttatattactccagaatcaccaaatgatgattggctcctcgaaggtcttgctggt
ttcttaacggatatgtttattaagcagtttttgggaaataatgaagcacgataccggaga
tacaaggcaaattgtgctgtatgtaaagctgatgatagtggtgcaatgtgcttaagtgca
tctccttcttgcaaggacctatttggaactcattctattgggatgcttgggaagatacga
tcatggaaatcaggagcagtccttcagatgttggagaagcaaatgggctcagactcgttt
cgtaaaattttgcagaaaattatatctcgagccaaggatccatctaattctatacggtcc
cttagcacgaaggagttccggcaatttgctaataagattggaaatcttgagcgtccattt
cttaaagaatttttccaacgatgggttgcatcttgtggttgtcctgtgctaaggattggg
ttgtcttataacaaacggaaaaacattgttgaaatggctgctctgcgggaatgcacagct
tcactcgatgcaagattatcagttattggggctacatctgattcagaaaaccgagatgtg
gatgttggctggccgggtattatgagtataagggtttacgagattgatggaatgtcagat
catccaaagttgcctatgactggagatagatggcagctactggaattaccatgtcattct
aaacttgctgccaaacgctatcaaaaaccaaagaagggagggaaacctgatggggctgaa
gaaaatgtcgatgctgttgtacagttagaaaataaaacaagcattgaatctcctttggct
tggattaaagctgaccctgagatggaatatattactgagattcaacttcaccagccccta
caaatgtgggtcaatcaactagagaaggatggagatgttgttgctcaggcacaggcaatt
gcgtcacttgaagctttgaaacagcactcattttccattgtgaatgcgctcaataatatt
ctcactgactccaaggtgttctggagagtacgcattggggcagcgtttgcattggctaaa
acagcatcagaggagactgactgggcaggtttgcaacatctaataaagttttataaaagt
agaagatttgatgcagagattggactccccaagccaaatgacttccgtgatttcccagaa
tattttgtgcttgaggccattccacatgccattgcaagagtaaggggtgctgaggggaaa
agccctcgagaagctgttgaatttatcttacagcttctgaagtacaatgacaacagtggg
aatccgtattctgatgtcttctggcttgctgtgcttgttcagtcagttggtgatctcgaa
ttctgtcaacagagtctaacgtttttagcccctcttctgaagcgcattgacagactcttg
cagtttgacaggttgatgccaagctacaatggcattttgacaattagctgcatccggacg
ttggcacaaactgctctcaagctttctgattccatcagtttcgaacacatctgtaaactt
atcgaacctttccgaaacttggaaacaatattgcaagttcgtgtagaagcaagtagggcg
cttcttgacatcgagtaccaatccaaaggcataagttctgcacttttgctgtttaaaaaa
tatgtggtagaagaatcatctttgagagggcaggttaaattgtgtgtacatatgatgcgg
ttatgtcaaatagcagttggatatgactcggatgattgtgttgacactgttagtcttctg
gatttgctgcatctattcaagagccatgtagtattcaacaatgaatgtcttcgccactac
ttgttctgcattttccaaatcctcgctggaagacccccaacgttgtttggagtgcccaaa
gaaaaacctttgcagcttgttgatgtagaggcctgcattgagccgaagaatgtatatttg
gtcccaggagcagaagcagcggggtcttcacttttgccacttggagatgccaaaggaaaa
tcactggatgttgctccgtttggttttccagtgcgatcacaggaaatgttcatgcctatt
gtttctgaactgaagtctccagaacctgttgcagcgtatgagacgcaacatcttgaacct
cgcatggaaagtcaaaaccaacctttacatgaaaatcttattgttcatgagatgccaccg
gatagcgtagccccaacagaagaattagctaataaggaagcaaactcttcgataaaggaa
ccacaaaaagaacctgatgtggtgtctgtgtcagttagtcacgaggtcaagaagtctgtt
atacggatcaaagtcagaccatctggtgcgaccagcagagccgagggatccgcacgatcc
atagaaagatctcaagggattgtggtacgccatgatatagataggggacaaactagttca
gcttcagtggatgctccacagagaatctcaacggatgctgtgagcataagcaatcagaat
cacgtggaggaagtaaactcgtgtcacgatgttggatctcgcatgactgcaagtatcggc
agtgtaaaatttgtaagcgaaggcgatacttttgggaaagagctgcaatgcactgctgag
tctgggaaaacttcggcaagccagaaagtagatactagcatacaaatcgcagcgcctagc
ttcataccagtagatcatagtatggaaaacgaggcgcagcagaaatacgcgagccttcaa
acactttctgttggtaaagaaaatgataagaagaaagacaaagaaaagaaagagaagaag
aggaaaagagaagacccggtttatctagaaaagaaacggttaaagaaagagaagaaaagg
aaggagaaagaaatggcaaagcttgtgagtagctcttcggatccagcaaagcttgtgagt
agctcttcggatccagcgacgaagaagaagatagagagtgtcacggaggctaaagtagaa
gaaccaagggatggtgccgtattggttaaggttgaaacagaggctgaccgtccgcttccc
aagttccgaatcaagctgaaaggcaaagcgttcaacaactcataa
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integrated database retrieval system
