Capsella rubella (pink shepherd's-purse): 17894716
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Entry
17894716 CDS
T02984
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17894716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17894716
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17894716
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17894716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
17894716
NCBI-ProteinID:
XP_006302671
UniProt:
R0I076
LinkDB
All DBs
Position
Unknown
AA seq
274 aa
AA seq
DB search
MSLFLKDDSIQIREVWNDNLEEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY
HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFGEFDLDSDIFAVDSIEL
LKQSGIDLAKNTQDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP
DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS
CTFRKLKENFFVGPLQKYSGVLYGLGVENGQVAI
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtttctgaaagacgattctattcaaatccgcgaagtctggaacgataacctt
gaagaagagatggatctgatccgagacgtcgtcgacgatttcccttacgtcgccatggac
actgagttccccggcatcgtcgtccgacctgtcggaactttcaaatccaacgccgattac
cactacgaaaccttgaagaccaacgtcaacatcctcaagatgatccagcttggcctcacc
ttctccaacgagcaaggcaacctcccaacctgcggcacagacaagtattgcatctggcag
ttcaacttcggagaattcgatctcgactccgatatcttcgcggtcgactccatagagctg
ctcaaacaatcaggcatcgacttggccaaaaacacacaagacgggatcgactccaagaga
ttcgcggagctcctcatgtcctcggggatcgtgttgaacgagaacgtgcattgggtcacg
ttccacagtggatacgatttcggatacttgctgaagctcctcacttgccagaacctgccg
gattcgcaaacagacttcttcaagctgatcaacgtttatttccccacggtctacgacatt
aaacacctgatgaagttctgcaacagccttcacggtggtctgaacaagcttgctgagttg
ctcgaagtcgagagagttgggatctgtcaccaagctggctcggatagtctactcacgtct
tgtactttcagaaagctcaaggagaatttcttcgttggtcctttgcagaaatattctggt
gttttgtatggactaggtgttgaaaatggtcaggttgctatctaa
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