Capsella rubella (pink shepherd's-purse): 17894737
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Entry
17894737 CDS
T02984
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
crb03012
]
17894737
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17894737
Translation factors [BR:
crb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
17894737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
UBA_DHX29
DEAD
HA2_C
Helicase_C
HA2_N
DSRM_DHX29
nSTAND3
DND1_DSRM
AAA_22
AAA_19
ATPase
Motif
Other DBs
NCBI-GeneID:
17894737
NCBI-ProteinID:
XP_006300903
UniProt:
R0GDU2
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MAPKKKPQKQSNKAAASSSSSKSNYQKPSSGPKLQISAENEDRLRRLLLNTGRSGPTVPA
PISNSLSKAQKTKKLTNVYEKLSCEGFVDDQIELALSSLRDGATFEAALDWLCLNLPSHE
LPVKFSTGASRFPTTGGSVGVISISRDDWNDSIDSSVQVEEEEPEVLIRVKGKQDEEDTL
NSGKSSQADWIRQYMMRQEEEELECWEDEVDGIDPRKKVSGPRPFDVISKEYYSARSDAI
KAKEKRDKRGQEQAGLAIRKLKQEISDLGISEAMLESEFQREYAFEEQELTCPMSDNLHE
SVDADDVSVQPLDNLTLDANPAGSCESEEIQTKVLPSSSSGQDLVALDEDSEDVELGGTF
FEEIPPSEISPHELLELQKEEKMRELRSEKNLGKLDGIWKKGEAQKIPKAFLHQLCQRSG
WEAPKFNKVTGEGRDFSYTVSILRKASGRGKNRQAGGLVTLQLPHKDENFESIEDAQNKV
AAFALHKLFSDLPVHFAITEPYASLLLIWKQEELFCTIQSTEEDRRASFVDKLLGEENFS
LTASSSGIDNALPLVDSDVKEKDDLGVVKSNHRAKKDSYIEAECLTLQRKQENKKRMPKY
KEMLKTRNALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYC
NIICTQPRRIAAISVAQRVADERCESSPGLDDSLVGYQVRLESARSDKTRLLFCTTGILL
RKLAGDKTLNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDNTSRKLKVILMSATVD
ADLFSRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAPDSPAALRSDSSIRDKLGSV
NDRRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQTQQNLKRLNEDIIDYELLEE
LICHIDDTCEEGAILIFLPGVSEIYMLLDRLAASYRFRGPAADWLLPLHSSIASTEQRKV
FLRPPKGIRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNPQKKLSSMVEDWISQANA
RQRTGRAGRVKPGICFSLYTRNRFEKLMRPYQVPEMLRMPLVELCLQIKLLGLGHIKPFL
SKALEPPSEGAMTSAISLLHEVGAVEGDEELTPLGHHLAKLPVDVLIGKMLLYGGIFGCL
SPILSIAAFLSYKSPFIYPKDEKQNVDRVKLALLSDNVVGSSDLNNNDRQSDHLLMMVAY
DKWVKILQERGMKAAQRFCESKFLSSSVMRMIRDMRVQFGTLLADIGLINLPKTGEFSGR
KKENLDVWFSDPSQPFNMYSQQREVIKAILCAGLYPNIAANDKGITETAFNSLTKQGNQT
KSYSAWYDGRREVHIHPSSINSSFKAFQYPFLVFLEKVETNKVYLRDTTIVSPFSILLFG
GSINVHHQSGSVTIDGWLKVAAPAQTAVLFKELRLTLHSILKDLIRKPEKSGIVHNEVVK
SMVHLLIEEGKPQHT
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atggctccgaagaagaagccgcagaagcaaagcaacaaagctgctgcttcgtcttcatca
tcgaaatcgaattatcagaaaccttcttctggtcctaagcttcagatttcggcggagaac
gaagatcgtttgcggcggctcttgctcaacactggccgctccggtcctacggttccggct
cctatcagtaattcgctctccaaggctcaaaagacaaagaaactcactaatgtctatgag
aaactctcttgcgaaggcttcgttgatgatcagattgagctcgctctctcctcccttaga
gatggagctacgtttgaggctgcacttgattggctttgcttgaacttgccgagtcatgag
ttgccagtgaagttttctactggagcttctcggtttcctaccacaggtggttctgtgggt
gtgatatcgatctcccgggatgattggaatgattctatcgactcttcagtccaggtagag
gaggaggagcctgaggttttaattcgagtgaagggcaaacaagatgaagaagatactctt
aattctggcaaatcatctcaagctgattggatccgtcagtatatgatgagacaggaagag
gaagaattggaatgttgggaagatgaagtcgatggtattgaccccagaaagaaggtatct
ggtccaaggccattcgatgtgatttccaaagaatattattcggcaagatcagatgctata
aaagcaaaggagaagcgtgataaaagaggacaggagcaagcaggcctagcgattcgcaag
ctcaagcaagagatatctgatcttgggatatcggaagcaatgttagaatctgaatttcag
cgcgaatatgcttttgaagaacaagaattaacctgtcccatgtccgataaccttcatgag
tcagttgatgctgacgatgtctctgttcagccgttagataacttgaccttggatgccaat
cctgctgggagctgtgagtcggaggaaattcaaactaaagtgcttccctcaagttcctcg
ggacaagatttagttgcattggatgaagattcagaggacgtggagcttggcggtacattt
tttgaagaaattccaccttctgaaatttcaccccatgaactcctggaattgcagaaggag
gaaaagatgagagaactacgcagtgagaaaaatcttgggaaactagatggtatctggaag
aagggtgaggcgcaaaagatcccaaaggcatttctccatcaattgtgtcagagatcaggg
tgggaagcaccaaagttcaataaagtaaccggtgaaggaagagatttttcatatactgta
agtattcttcgcaaagccagtggacggggtaaaaacagacaagccgggggtctggtaact
cttcaacttccacataaagatgagaactttgaatccattgaggatgcacaaaacaaagtt
gcggcatttgctcttcataagcttttttctgatttacctgtccactttgcaattacggag
ccttatgcgtctctacttctgatctggaaacaagaggaattgttctgtaccatacaaagc
acagaagaagaccgaagagctagttttgttgataagttgcttggggaggaaaatttcagt
ttaaccgcgtcatcaagtggcattgacaatgcacttccattggtggactccgatgtcaaa
gagaaagatgacttgggtgttgtcaaatctaatcatagagctaaaaaagactcctatata
gaagctgagtgtttaaccctccaacgaaaacaagaaaacaaaaagagaatgccgaagtac
aaggaaatgttgaaaactagaaatgctcttcctatatccgaagttaagaatggcatactc
cagcatctgaaagaaaaagatgtcttggtggtatgcggagaaacaggctccggaaagact
acacaggttcctcaatttatattggatgatatgattgattcggggcatggtggatactgt
aatatcatatgcacacaacctcggcggattgcggctatctctgttgctcaaagagttgct
gatgagcgttgtgaatcctctccaggcttagatgactccttggttgggtatcaagttcgt
cttgaaagtgcaaggagtgacaagactaggctgctgttttgtactactggcattctattg
aggaaactcgctggagataaaaccttgaacgatgttacacatattatagtcgatgaagtg
catgagcggtctcttttgggtgattttctcctcattattttgaagagcctgattgagaag
caatcatgcgataatacatcacgtaaactaaaagttatccttatgtccgctactgtggac
gcagatctattctcaagatattttggtcattgtccagtgattactgctcaaggaagaaca
catccagtcactacccacttcctggaggagatttatgagagtattaactaccttcttgca
ccagattctcctgctgcgttaaggtctgattcatctattagagacaagcttggttccgta
aatgaccgtagggggaaaaagaatcttgtattggctggctggggagatgattatttgctg
tctgaggactgtctcaacccattctatgtttccagtaattacaactcatacagtgaccaa
acacaacaaaatctgaaaaggttaaatgaggatataattgactacgagcttcttgaagag
ttgatatgccacattgatgacacttgtgaggaaggggcaattcttatatttttgcctgga
gtgtcagaaatttacatgttactcgataggttagctgcctcgtatcgttttcgtggacct
gctgcagattggcttcttcctctacattcttctattgcatctacagaacagagaaaggtg
tttctgcgtccccctaaaggcatacggaaggttatcgcagctacaaatattgcagagacc
agtataacaattgatgatgtggtgtatgtgattgacagtggcaaacacaaggaaaatcgc
tacaatccacagaagaaattgtcgagcatggtggaagattggatatctcaagcaaatgca
aggcagagaacaggaagagctggacgtgtcaaacctggtatttgcttttcattgtacaca
cgcaataggttcgagaagttaatgcgtccctatcaggttcctgagatgctgcggatgcca
ttagtagagttatgtctacaaatcaaattgcttggcttgggtcacattaaaccttttctg
tccaaggctttggaacctccgagtgaaggtgctatgacctctgcgatttcattgttacat
gaggtcggtgctgttgaaggggatgaagagttgacaccacttgggcatcatttagcaaaa
cttcctgttgatgtgttgattggaaagatgctgttatatggtggaatatttggttgctta
tcacctattctctcaatcgctgctttcttgagctacaaatcaccgtttatatatcccaaa
gatgagaaacaaaatgtcgaccgggtgaaacttgctctcttgtctgacaatgtggtgggc
tcgagtgatttaaacaacaatgacagacaatctgatcacctccttatgatggttgcatac
gataaatgggtgaagatactgcaagagcgaggaatgaaagctgcacagaggttctgtgaa
tcaaagttcttgagcagctcagtgatgcggatgatcagagacatgagagtacaatttggc
acattacttgccgatatcgggctcatcaatcttcctaaaacaggagagttttcggggaga
aaaaaggagaatcttgatgtctggttttctgacccaagtcaacctttcaatatgtattca
caacaacgtgaagttattaaggctatactatgcgcaggactatatcctaatatagcagcc
aatgataaaggaattacagagacagcgtttaacagtttgacaaagcaaggaaaccaaaca
aagagctactcggcatggtacgatggcagaagagaagttcatatccatccatcttctata
aacagcagcttcaaagcattccaataccctttccttgtattccttgagaaggttgaaacg
aacaaagtatatttgcgagatacaaccatcgtttctcctttctccattctactttttggt
ggctcaatcaatgttcatcatcagagtggatcagtcaccattgatggatggttgaaggta
gcagcaccagctcaaacagcggttttgttcaaagaactccggttaacccttcattccatt
cttaaagatctcatccgaaaacccgagaaatcaggtattgtccacaatgaagtcgtaaaa
tctatggtccatcttcttatagaagaaggcaaaccgcaacacacatga
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integrated database retrieval system
