Capsella rubella (pink shepherd's-purse): 17894798
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Entry
17894798 CDS
T02984
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17894798
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17894798
Spliceosome [BR:
crb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
17894798
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
IstB_IS21
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
17894798
NCBI-ProteinID:
XP_023643703
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MNTLPVVSLLTPSSSSSFKFFHFPSSHRSLSPSSNFSFTKSLIFTPRQLLSLKTSLNSLS
PSQSQLSEEYEEEEEDDEEDEEDEEYDDDDEAADEYDNISDEIRNSDDDETEYPLDLPAE
ESSRERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSSVV
VSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFKETFGEDNVGLLTGDS
AVNKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIV
IYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLVPLLD
ERGTNVNRKLSLNYLQLSASEARFRDDDDAYRKRRSKKRGGDTSYNNSVNVTDYPLSKNE
INKIRRSQVPQISDTLWHLQGKDMLPAIWFIFNRRGCDAAIQYVENFQLLDDCEKSEVEL
ALKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAA
GINMPARTAVISSLSKKAGNERIQLGPNELFQMAGRAGRRGIDDKGYTVLVQTAFEGAEE
CCKLVFSGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTDDGKVLQAGRSLEEAKKLVEK
SFGNYVSSNVLVAAKEELAEIDKKIEILSSEVSDEAIDKKSRKLLSARDYKEITVLKEEL
AEEKRKRAEIRRRMELERFSALKPLLKGMEEGNLPFICLEFKDSEGMQQSVPAVYLGHID
SFQGSKLQKMMSLDESFALNVIEDELVENEPGKPIVNPSYYVALGSDNSWYLFTEKWIRT
VYRTGFPNIALALGDALPREIMKTLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNV
PVLSSLSEEEEVLHMSQEYDNAAEQYREQRRKIFRLKKKMARSSGFREYKKILENANLTV
EKMKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRG
ENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFL
EEQRSSLIKLQEKYEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRT
IDLLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcttcccgtcgtctccctcctcacaccttcttcttcttcttccttcaaattc
ttccatttcccttcttcacaccgttctctctctccttcctcaaacttctccttcaccaaa
tccctaatcttcactccacgacaacttctctccctcaaaacctccttgaattctctctca
ccgtcgcagtctcagctctctgaggagtacgaggaggaagaagaggatgatgaagaagat
gaagaagacgaagaatacgacgatgatgacgaagccgcggatgagtacgacaatatctcc
gacgaaattcggaacagcgacgacgatgaaaccgagtatccgttggatttgccggcggaa
gagtcgtctcgggaacgagtggagtttaggtggcagagagttgagaagcttcgtagtctt
gttcgtgattttggagtcgagatgattgatatcgatgaactcatttcaatctacgatttt
cgaatcgacaagtttcagagattggctattgaagcttttcttagaggttcctctgttgtg
gtttccgctcccacgagtagtgggaagactttgattgctgaagcagcagctgttgctacg
gtggctcgaggtcgacgtttgttctacactacacctcttaaagcactctctaatcagaag
tttcgtgagtttaaggagacgtttggcgaagataatgttggtcttctcactggtgactct
gccgttaacaaagatgctcagattgtgatcatgactacagagattctccgcaacatgttg
tatcaaagtgttggaatggcttcttcaggaactggactttttcatgttgatgcaatcgtt
ttagatgaggttcattatttaagtgacatctctaggggaactgtgtgggaagagatagtc
atttattgcccaaaggaggttcaacttatttgcctatcagctacagttgcaaacccagat
gaattagctggttggattggtgagatacatggtaaaactgagttggtaacctcgacaaga
cgcccagttccattaacttggtacttctcaacaaaacattctttagtacctctgcttgat
gagagagggacaaacgtgaataggaagctgtctctcaattatttgcaactgtctgcgtca
gaagctagattccgtgatgatgatgatgcatataggaaaaggaggtcaaaaaaacgagga
ggtgataccagctacaacaattctgtgaacgttactgattatcctctttcaaagaatgag
ataaacaagattcgccgatcacaggtacctcaaattagcgacacattatggcatctccag
ggaaaagatatgttaccagcaatatggttcatttttaaccgtagaggatgtgatgcagct
atacagtatgttgaaaattttcagcttttagatgattgcgagaagagtgaggttgagtta
gccttgaagaagtttcgcgttctatatccagatgcagtgagagagagtgcagagaaagga
ctgcttaggggaatcgctgctcatcatgcaggttgtctacctctttggaaatctttcatt
gaggaactgtttcagcgaggacttgttaaggtggtctttgctactgagacacttgccgct
ggaataaacatgccagctagaacggctgttatttcgtctctatcaaaaaaggctggtaat
gaacgaatacagttgggtcctaacgaattgttccagatggctgggcgtgctggacgtaga
ggcattgatgataagggctacactgtgctggtgcagactgcttttgaaggcgccgaagag
tgctgcaagcttgttttttctggagttaaacctctcgtgtcacagtttactgcttcatat
ggcatggtgctgaatctggtagctggttctaaagttactcgtaaatcaagtggaactgat
gacgggaaagtcttacaagcagggagaagtctcgaagaagccaagaaattagttgagaag
agttttggaaactatgtgagcagcaatgtgctggttgctgcaaaggaggaacttgctgaa
attgacaagaagatcgagattctgtcatctgaagtaagcgatgaagcaatagataagaaa
agtaggaaacttctctcggcgagggactacaaggagatcactgtactgaaggaagagctg
gcggaggagaaacgcaagcgtgctgaaatacgaagaaggatggaactcgaaaggttctcc
gcgctaaaacctcttttaaaagggatggaagagggtaacttaccatttatttgtttggag
ttcaaggactctgaagggatgcagcagtcagtccctgctgtttacttaggacatatcgat
tcatttcaaggttccaaacttcagaagatgatgtctttggatgagtcttttgcgttgaac
gtaattgaggatgagctggtggaaaatgaacctggaaagcctattgttaacccatcttac
tatgtggcccttggctctgataactcatggtatctctttaccgaaaagtggataaggact
gtctacagaactggtttccctaacattgctctagcgcttggagatgctttgcctcgggaa
atcatgaagactctcctggataaagcagatatgcagtgggataaactagctgaatccgag
ctcggaagtttgtggagattggaaggatctcttgagacatggtcctggagtttaaacgtg
cctgttctaagcagcctttctgaagaagaagaggtcttacatatgtcccaagagtatgat
aatgctgcggaacagtacagggaacaaaggaggaaaatatttcgtttaaagaagaagatg
gctaggtcatcagggttcagagaatataagaaaattctagagaatgctaatctgacggtt
gagaagatgaagcggctcaaggcgagatccagacgcctcataaaccgtttagagcagatt
gaaccgtctggttggaaagatttcatgcgcataagcaatgtgatccacgaaagcagagca
ctcgacattaacacacacctgatatttcctctgggagaaacagctgctgcaatcagagga
gaaaacgagctctggcttgcaatggtgctccggaacaaagcccttgtggatctcaagcct
cctcagttagctggtgtatgtgcaagtttagtttcagagggcataaaagttcgaccttgg
agagacaacaactatatttacgagccatctgatacagtagtagacatggttaatttctta
gaagaacagagaagctctcttataaagcttcaagagaagtacgaggttatgattccatgt
tgtttggacgttcagttctctggtatggttgaagcttgggcttctggattaagttggaaa
gaaatgatgatggaatgtgcaatggacgaaggcgatcttgctcgactgttacgacgcacc
attgatctcttggctcagattcctaagttgcctgatattgacccggtcctgcaacgtagt
gcagcagctgcagcagacatcatggaccgtccaccaatcagtgagcttgccggttga
DBGET
integrated database retrieval system
