Capsella rubella (pink shepherd's-purse): 17895407
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Entry
17895407 CDS
T02984
Name
(RefSeq) cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
17895407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17895407
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
17895407
U7-dependent histone pre-mRNA processing factors
17895407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
partial_CstF
RRM_10
DUF8400
Motif
Other DBs
NCBI-GeneID:
17895407
NCBI-ProteinID:
XP_006301453
UniProt:
R0GFA5
LinkDB
All DBs
Position
Unknown
AA seq
458 aa
AA seq
DB search
MASSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE
TALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQGQGGTGLPATTESQKQIGGPGESN
MHQPVGLHLAMTAASVMAGALGGPQVGSQFTQSTLQVPASDPLTLHLAKMSRSQLTEIIS
SIKLMATQNKEQARQLLVSRPQLLKSVFLAQIMLGIVSPQVLQTPNIVQAPSHMTGSSIQ
DTQSSGQNLLPPLAQRPQQLSRPPHSQLPVQQSSKQPFSQIPQLVAQPGPSSVNPPSRSQ
VKGLNETAPFQRQQVVPASTSIGYSSQTSVPNNAIQPSQVPRQALTNSVMQQGGQSVSLN
YGKRINEGPHQSMNRPLKMMKVEDRRTTSLPGGHASNSMLPNQVQAPQAHISPDVQSTLL
QQVMNLTPEQLRLLTPEQQQEVLKLQQALKQDHMMQPS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatcatcccaacgtcgctgcgtttttgttgggaacattccttacgacgcaacc
gaggaacaactcagagaaatttgtggagaagttggacctgtagtctcgtttagattagtt
accgatagagaaactggtaaaccaaaaggctacggcttttgtgagtataaggacgaagaa
acggcattgagtgctcgtcgtaatcttcagagttacgaaatcaatggccgtcagttaaga
gttgattttgccgagaatgacaaaggaactgacaaaacccgtgatcagggtcaaggagga
actggtttgcctgctactactgaatctcaaaagcagattggagggcctggagagtcgaat
atgcatcagcctgtcggtctccaccttgctatgactgctgcatctgttatggcgggtgcg
ctaggtggtccacaggtcggttcacaatttacacaaagtactctgcaggttccagctagt
gatcccctgactcttcatcttgccaagatgtctagaagtcagcttactgaaattatatcg
tccattaagttaatggctacacagaataaggaacaagctcgacagttgttggtttcaaga
ccacagttgctaaaatctgttttcctggcgcagataatgcttgggattgtgagtccacaa
gtgttgcagacgccaaatattgttcaagccccaagtcatatgacagggtcttcaattcaa
gacacgcaatcatctggtcaaaaccttttaccgccactggcacaaaggccgcagcagcta
agtcgccctcctcatagtcagcttcccgttcaacagtcttctaaacaaccttttagtcag
attccacaactagtagcacaaccaggtccttcttctgtgaatcctccttctagatctcaa
gttaaaggtctcaacgaaaccgctccattccaacgccagcaagtggttccagcttccacc
agcataggttatagtagtcagacctcagttccaaataatgctatccagccatctcaagta
cctcgccaagcattaacaaattctgtgatgcagcaaggtgggcaatctgtatcattaaat
tatggcaaaagaataaacgagggtcctcatcaatcaatgaacagaccattgaagatgatg
aaagtggaggataggagaaccacttcactccctggaggtcatgcatctaattctatgctt
ccgaatcaagtacaagctccccaggcacatatatcacctgatgttcagtcaacactgctc
cagcaagtaatgaaccttacgccagaacagctgagattgctgacgccagagcaacagcaa
gaggtcttaaagctgcaacaagcgctcaagcaagaccatatgatgcagccttcatag
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