Capsella rubella (pink shepherd's-purse): 17895533
Help
Entry
17895533 CDS
T02984
Name
(RefSeq) nuclear-pore anchor
KO
K09291
nucleoprotein TPR
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
17895533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17895533
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
17895533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
17895533
NCBI-ProteinID:
XP_006301697
UniProt:
R0I928
LinkDB
All DBs
Position
Unknown
AA seq
2115 aa
AA seq
DB search
MPLFMPDDELARLSSDAASVVAERADEYIRKIYAELDSVRAKADAASITAEQTCSLLEQK
YLSLSQDFSSLESQNAKLQSDFDDRLAELAQSQAQKHQLHLQSIEKDGEVERVTTQMSEL
HKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLTDSSSEKEARLAEASAELARSQAMC
SRLSQEKELTERHAKWLDEELTAKVESYAELRRRHSDLEAEMSAKLVDVEKNYNECSSSL
NWHKERLRELETNISSLQEDLSSCKDAATTTEEQYNAELCTANKLVELYKESSEEWSRKA
GDLEGVIKALEERLSQVESGYKEKLEKEVSTKQLLEKENEDLKQKLEKCETEIEKSRKVD
ELNLIPFSSFTRRGDDSGTSNMIEESQAVISKIPSGVSGTALAASLLRDGWSLAKIYEKY
QEAVDALRHEQLGRKEAEMILQRVLSELEEKAGFIQEERGEYERMVEAYCVVNQKLQDSV
SEQSKMEKFIMELKADLRRRERENTLLQKDIADLQKQVTLLLKECRDVQLRCGAARDDDD
EDYPLLSDVEMDMESEADKIISEHLLKFRDINGLVEQNVKLRSLVRSLSEQIESREMELK
EKFEIDLKNKTDEASAKVVIVLKRAEEQGQMIESLHTSVAMYKRLYEEEQKLHSSDSRSS
ELSPAVVPGRKKFLHLLEDSDEATKKAQEKAFERIRSLEEDFAKARSEIIAVRSERDKLA
MEANFAREKLEGIMKESEHKREEMNGVLARNIEFTQLIIDHQRKLRESSESLHAAEEISR
KLSMEVSVLKQEKEVLSNAEKRASDEVSALSQRVYRLQATLDTLQSTEEVREEARAAERR
KQEEHIKQLEREWAEAKKELQEERSNARNITSDRNQTLNNAVMQVEELGKELANSLKAVS
VAESRASVAEARLSDLEKKIKSSDPKVLDMDNGRIISLSDNEMSVELRSAKEEIEKLRGD
VESSKSHMLQYKSIAQVNETALKQMESAHENFRLEAEKRQKSLEADLVALRERVSELEND
CIQKSEQLATATAGKEDALVSASAEIASLREESLVKNSQMEAMNIQMSTLKNDLEIEHEK
WRVAQRNYERQVILQSETIQELTKTSQALAALQEEASELRKLADARGIEISELNAKWSEE
KLMLEQQKNLAEKKYHELNEQNKILHSRLEAKHLNSAEKDSRSGKTSSGSTDTDQLEDSG
FQSVVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASIRASLLT
EDGIKSLQLQVSEMNLLRESNMQLREENKHNFDECQRLREVAQKARMESENFENLLKKKQ
TELDLCMKEMERLRMETDLQKKRVDELRETYRNIDVADYNRLKDEVRQLEEKMKAKDVHV
EDFKKLLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMHSEFNKQKQEMEKYK
KVYFSFNASKRKYEKEKEDLNKVNQSLSKQLDEVKEAGKRTTTDAMVEQAVKEREEKEHR
IQLMDKYVHTLKDEVKKKTEDLKKKDEELTKERTERMSVEKEVGDSLTKIKKEKLKVDEE
LSKLERYQTALAHLSEELEKLKQADGNLPEGTAVVQVLSGSILSDKAAAYVSAVEYFERM
ARSIAINSQVSTKPTDMVTEPSSGTPAAVDSSAMARAPSSTPLKAPVATTPQPPKVASDN
KEKRSALQKPSTEVRRPGSSKRIIRPQLVKPEESSQIDIDMPEAEGAGDDGKQLAAHETE
SQVSTSVRPVRKRQADSLVSEPQLESLTQGETSSEVVPPATKKAKGSESKADAFEGENLA
KEPAIEELLDATTAADADNEETEAENAEEKMEDSVEGQQENEAEMQDKADEPVEENPTET
ETTPTEEESRYQTEQENQELLTDMESDKEEGELDLDTLEDLDEVTDIANMMRSPEKDELQ
PEPLATPTQSPTRMETAMEEAETSIETPLEDDKTEEGGDTAEEASDKPNNANDQQEVPET
VLKPDTTAATTSHVSMTPPSSSTQASAITSSGAPPTSSTQASAITSSGAPETEETKRAAS
PGGGSSPTIVKLSERAIENAKKRQARIVNLAGTSRAPIPAIRGRGRTVNLRGAGRLLPRG
GRAPRGGRGQSPSPP
NT seq
6348 nt
NT seq
+upstream
nt +downstream
nt
atgcccttgtttatgccagacgatgagctggcgcggctatctagcgacgccgcgtcggtg
gttgccgagagagccgacgagtacatacgcaagatatacgccgagttggatagtgtacgt
gctaaggctgatgctgcttccatcacagcggagcagacgtgttcgcttctcgagcagaag
tacctctcgctatctcaggatttctcttccctcgaatctcagaacgccaagcttcagtct
gatttcgacgatcgtttagctgagcttgcccagtctcaagcgcagaagcaccagcttcat
ttgcaatcgattgagaaggatggagaggtagagagggtgacgacgcagatgtcagagctt
cataagtctaagaggcaactgatggagttattggagcagaaagatgccgagattagtgag
aagaattccactatcaagagctacttagataaaattgttaagctgacggactctagttca
gagaaggaggcccgactagctgaagccagcgcagaattggcacgctcccaggctatgtgc
agtcgtctatcccaggagaaagaactcacggaaaggcatgccaaatggctagatgaggag
ttgacagccaaagtcgagagttacgctgaactccgtagaaggcattctgatcttgaagct
gaaatgtcagcaaagcttgtagatgttgaaaaaaattacaatgagtgttctagttcctta
aattggcataaggaaagattgagagagctcgaaacaaatattagttcattacaagaggac
ctcagctcttgcaaggacgcagcaacaaccactgaagagcaatacaatgctgaactttgc
actgcgaacaagcttgttgagctgtacaaggaaagttcagaggagtggtctagaaaggct
ggcgatcttgaaggtgttattaaggccttagaggaacgcttgagccaagtcgagagtggt
tacaaagagaaacttgagaaagaggtgtctacaaaacagctgttagagaaggagaatgaa
gatcttaaacaaaaacttgagaagtgtgaaacagaaattgagaaaagtaggaaagtagat
gagctgaatctgatacctttcagcagtttcaccagacgaggtgatgattctgggaccagc
aacatgatagaggaaagccaggcagtaatttcaaagattccttctggtgtgtcaggaact
gcactagcagcttcactcttacgtgatggatggagtcttgccaaaatttatgagaagtat
caagaggctgttgatgccttgaggcatgaacaattaggtcgaaaggaagctgagatgata
cttcaacgggtattatctgaactagaagagaaagccggatttatccaagaagaaagaggg
gagtatgagaggatggttgaagcgtattgtgtagttaatcaaaaacttcaggattctgtg
tctgaacaatcaaagatggagaagttcattatggagctgaaggctgacttgaggagacga
gaacgtgaaaacacactattgcagaaagatattgctgacttacaaaaacaggtgacgcta
ctcctcaaggagtgtcgtgatgtccaacttcgatgtggagctgccagggatgatgatgac
gaagattatcctctgctatctgatgttgagatggatatggaatcggaagctgataaaatc
atctcagagcatcttttaaagttcagagatataaatggattagttgagcagaatgttaaa
ctgagaagtcttgttcgtagtctttcagagcagattgaaagtagggaaatggagctgaag
gagaagtttgagatagacctgaagaataagactgatgaagcttctgccaaggtagttatc
gtgctaaaaagagctgaagagcagggacagatgattgaatctctgcacacatctgttgca
atgtataagcgattatatgaagaggaacagaaacttcattcatctgattctcgttcttca
gagttgtctccagctgtagtgccaggaaggaagaaatttttacatcttctcgaggattca
gacgaagctactaaaaaagcccaagaaaaagcttttgaacgcatccgaagtctagaagaa
gattttgcaaaagctaggagtgagataattgcagtaaggtctgaacgagataagttggcc
atggaggcaaattttgctagggaaaaacttgaaggcatcatgaaagaatctgaacacaag
agagaagaaatgaacggcgttttggcaagaaacattgagttcacacagttaatcattgac
caccagcgaaaattgcgcgagagttccgagtctctgcacgcagcggaagagatttccaga
aaattgtctatggaggtctcggttctcaaacaagaaaaagaggtgttatcaaatgctgaa
aaaagagcttctgatgaagtttctgctctatctcagagagtttaccgtcttcaggctacc
ttggatactctacaaagtacagaggaagttcgtgaggaagcaagagctgccgagagaagg
aaacaagaggagcatattaagcaacttgagagagaatgggctgaagctaagaaagaattg
caagaagaaaggagcaatgcgcggaatattacttcggaccgcaatcaaactttgaacaat
gctgtaatgcaggtagaagaattgggaaaagaattggccaattccttgaaggctgtctca
gtagcagagtccagggcttctgtggctgaggctagactttctgatttggagaagaagata
aaatcgtcagatcctaaggttcttgatatggacaatggtagaatcatttctctttcggat
aatgagatgtccgtcgaattgcgtagcgctaaggaagaaatcgagaaattgaggggcgat
gtagaatctagcaaaagccacatgctccagtataaaagtatagctcaggtgaatgaaact
gcgttaaagcagatggaatctgcccatgagaacttcagacttgaggctgaaaagagacaa
aaatcgttggaagcagatcttgttgctcttcgggagagggtgtcagaacttgaaaacgac
tgtatacaaaagtcagagcaactagccactgctactgcaggaaaagaagatgctcttgta
tcagcatcggctgaaattgcaagtctgagagaagaaagcttggttaaaaattcccaaatg
gaagcaatgaatatccaaatgtccactttgaagaatgacttggagatagaacatgagaaa
tggcgtgttgctcagagaaattatgaaagacaggttattctgcagtctgaaactattcag
gagcttacaaaaacatcacaggctttagcagcccttcaagaggaggcatctgaactacgt
aaactagctgatgcccggggaattgaaatttctgagcttaatgccaagtggagtgaagag
aaattgatgctagagcagcaaaagaatttggctgagaaaaagtatcatgaacttaatgaa
cagaacaaaatacttcatagcagacttgaggctaagcaccttaactcggctgagaaggac
agccgatctggaaaaacatcatctggaagcactgacacagatcaacttgaagattcgggt
tttcaaagtgtagttaactacctacgcagaacaaaagaaatagctgaaacagagatctcg
ctaatgagacaggagaaacttcggttgcagtcgcaacttgagagtgccttgaagatggca
gaatctgcccggggatcacttaatgctgagcgcgccagtataagagcctcattgttgact
gaggatggaatcaaatctcttcagcttcaggttagtgagatgaacttgctccgtgaaagc
aacatgcaactcagggaggaaaataaacacaattttgatgaatgtcagagattgcgtgag
gtagctcaaaaggctaggatggaatcagaaaattttgaaaatctcctaaagaaaaagcaa
acagagttggacttgtgtatgaaagagatggaaaggctaaggatggagacagatcttcaa
aagaagagggttgatgagttgcgggagacatatagaaacattgatgttgctgattacaat
cgcctcaaagatgaagtgcggcaactagaggagaaaatgaaagcaaaagatgttcatgtt
gaagatttcaagaaacttctgttagagaagcagaacaagatatctctattggagaaggag
ctgacaaactgcaaaaaagatctgagtgagagggagaagaggttagatgatgctcaacaa
gcacaggctactatgcattcagaattcaataagcagaaacaagagatggaaaagtacaag
aaagtttatttttcttttaacgcgagcaagagaaaatacgaaaaagagaaggaggattta
aacaaagtaaaccagtcactctctaaacagttggacgaagtcaaagaggctggaaagaga
acaacaactgatgctatggtggagcaggctgttaaggagagagaggaaaaagaacataga
attcagcttatggataagtatgttcatacactgaaagacgaggtgaagaaaaaaaccgaa
gatttgaagaaaaaagatgaggagttaactaaagagagaacagaacgcatgtctgttgaa
aaagaagttggagattccttgaccaaaattaaaaaggagaaactaaaagtggacgaagag
ctttctaagctcgagaggtatcagacagcattggcccatctatccgaagaactggaaaaa
ttgaagcaagcggatggcaatcttcctgagggtactgcagttgtccaggttctatctgga
agcatattgagtgacaaagctgccgcttacgtgtctgctgtagagtactttgaacgcatg
gctcgttctattgccatcaattctcaagtcagcactaagcctactgatatggtgactgaa
ccttcctctggcactcctgctgctgttgactcttcggccatggcgagagccccttcttca
acacctttaaaagctccagtggcaactaccccgcagccacccaaagtagcgtcagacaac
aaagaaaagagatcggcgttgcagaaaccaagcactgaggtccgtagaccaggtagtagt
aagcggattattcgtcctcaacttgttaaacccgaggaatcttcccaaattgatattgat
atgccagaagctgagggagctggtgatgatggaaaacaattagcagcccatgaaacagag
agccaagtgagcacatctgtacgacctgtccgtaaacgccaggctgattcgttggtttct
gagccacaactagagagtctgactcaaggagaaactagttctgaggttgtgccacctgcg
acgaaaaaggcaaaaggatctgagtcaaaagctgatgctttcgaaggtgaaaaccttgca
aaagagccagcaatagaagaattgttggatgctactactgccgctgatgctgacaatgaa
gaaacagaagccgagaatgcagaggagaaaatggaggattctgtggaaggacaacaagaa
aacgaagctgaaatgcaggataaagctgatgaacctgtggaagaaaatccaactgagaca
gaaaccacccccactgaagaagagtctaggtatcagaccgaacaagagaaccaagagctt
cttacagatatggaatccgataaagaggaaggagagctcgatctagatacacttgaagat
ctggatgaggttactgatatagcaaacatgatgaggagtccagagaaagacgaattgcag
cctgagccgctagctacacccacacagtcaccgactaggatggagacagcaatggaagaa
gctgaaacatccattgagacaccgcttgaagatgataagactgaggaaggaggtgataca
gctgaagaagcctctgataaacctaacaatgctaatgatcaacaagaagttccagagact
gttctcaagccagacaccacagcagctacaacctcccatgtatctatgactccaccctct
tcctctactcaagcttctgcaattacttcaagcggagctccacccacttcctctactcaa
gcttctgctattacttcaagcggtgctccagaaacagaagaaaccaaaagagccgcatca
ccaggtggtggaagttcaccaacaattgtgaaactatctgaaagagcaatagagaatgca
aaaaaaagacaagctagaatagtcaatcttgcaggaacctctcgagctcctattccagcc
atcagaggtcgcggtcgaactgtaaaccttcgaggagccggccgattgctgcctcgtggt
ggtcgagcaccacgtggtgggcgtggacaatccccgagcccgccatga
DBGET
integrated database retrieval system
