Capsella rubella (pink shepherd's-purse): 17895559
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Entry
17895559 CDS
T02984
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
crb04812
]
17895559
Cytoskeleton proteins [BR:
crb04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
17895559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_EIPR1
eIF2A
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Vps41
VPS8_N
Beta-prop_VPS8
Beta-prop_IP5PC_F
Beta-prop_NOL10_N
MatP
Motif
Other DBs
NCBI-GeneID:
17895559
NCBI-ProteinID:
XP_006300659
UniProt:
R0GCT0
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MAKRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSA
VDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSS
DANLKIWDIRKKGCIQTYKGHTRGINTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEF
KLHEGAIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRT
LFCGLDDSLKVYSWEPVVSHDGVDMGWSTLGDLCISEGKLLGCSYYQNSVGIWVSDISQI
EPYGTGSVDKKECVEKILSALDDQSSDKIRSSSRRSSSPDYETKEIKNIYIDCGNSAVAH
KSVSLITPKVKETSTGQEGDNKSIIVQSVVPRDSKIGKDSSDSGKESITLLKTKPGMLLR
PAHVRKTPTKYDETKQSVAIQFGIPKKSGSDSEKKLDTGTAFDSERSVRKPFNVDDSIIK
SITSKFEQALLPESPTDEAKCMVLKPPHVQRSPSTRYNEAKLATSVDSGALDSKNSGLES
SKYIESPTGLKDDRGSNPCEDVIDNKSISSRSERVLSPEKAGDEMKSLESPEGNKESNSV
KVVRGVKVVSGRTRSLVERFERGEKVTHTEDKAASATIVQSSDAVEEEPQTASVQAVSMT
PTQVMPVKLDQATNSMPVEVSVLSTRRTRSTPVRVMPVVLGRDTYMATDEPPVTSTRPDR
TSSTNLASDVSCVTSTRQPRTLPAPVMPEIVDQISNMESNEPPVTSTQPDRTSTILTSDE
SDVTSTRQARTSPAPVMPMILNQTSKMKSDERPVTSTRPDRSSATNLISDESPVTSTRQA
KTSPALVTPVILNQRKKTNMKSDEPPVISTRQVRTTSARVMPVILNQASNTYDERPVSSS
RSARTSPARVMTMKLTQVENMPSYEPQVALTRSARNSPARVIPVRNSQASNLTSNASNIR
SRQRYSPTQTLSTPAALDQVTDMTLDEAYISETQPASDILTQKEEPQISGRENDGDIWET
LMETHNEVLNTLQSRLTKLQIVRHFWERSDIKGAIMALRKLSDHSVQADVISILTDKTEI
LTLDLFSQLAPVLTGLLGSRTERPVNVSLEMLLKLVAVFGTVIQSTVSARRVVGVDLHAE
ERLQICQSCSAELQKVHKILPLLTRRGGLIARKAQELNLVLQTP
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgtggatataagctccaggagtttttggcacattctgcaaatgtgaattgc
ttaagtattggaaagaagacatcacgtctctttataactggtggtgatgattacaaagtc
aacctttgggcgatcggcaagcctacttctttaatgagtctatgtggacatactagtgca
gtggattcagtagcttttgactccgcagaagttttggtgctcgctggagcttcttccggt
gtgataaagctgtgggatgtagaagaagcaaagatggttcgagcttttactggacataga
tccaattgttctgctgttgaatttcatccctttggtgaatttttggcatcgggatcaagt
gacgcgaatctaaagatttgggacatcagaaaaaagggatgcatacagacgtacaagggt
catactcgtggcatcaacactattagatttactcctgatggtcgttgggtagtgtcagga
ggacttgacaatgttgtaaaggtatgggatttgactgctggaaagcttttgcatgaattt
aaacttcatgaaggagctatccgttcactagacttccacccactcgagttcctcctagcc
acaggttctgcagacaggactgtaaagttctgggatttggaaacgtttgaattgattgga
tctacccgaccagaggctactggagttcgttcaatcaaatttcatccggatgggcgaacc
cttttttgtggtttggatgatagcttaaaggtttattcatgggaaccagtagttagccat
gatggtgttgatatgggatggtcaacgcttggtgacttatgcatcagcgaagggaagctc
ctgggttgttcgtactaccaaaattccgtagggatttgggtgtcagatatatcacaaatt
gagccatatggcactggatctgtggataaaaaggaatgcgtggagaaaatactcagtgca
ctggatgatcagtcctctgataaaataaggagtagctcaaggcgcagctcatctccagat
tatgagacaaaagagatcaaaaacatatacatcgactgtggaaattcggctgttgcacat
aagtcagtatctctaattactccgaaagtcaaagaaacttcgactggacaagaaggggac
aataaatctatcatagtgcaaagtgttgtaccacgagatagtaaaattgggaaagactct
tctgattcaggaaaggaatctatcactttattaaaaacaaaaccgggcatgctgctgaga
ccagctcatgtaagaaagacgccaacaaagtatgatgaaaccaagcagtcagtggccatt
caattcgggattccaaagaaaagtggatcggacagtgagaagaagctagatactgggacg
gcatttgattcagaaagaagtgtcaggaaaccatttaatgttgacgattcaatcatcaag
agtataaccagcaagtttgaacaagctttattaccagaatcaccaactgatgaagcgaaa
tgtatggtgctgaaaccacctcatgtacagagatcaccaagtactagatataatgaggca
aaattggcgacatctgttgattctggagctttagacagtaaaaacagtgggttagagtcc
tcaaaatacatagaatcaccaacagggctcaaggatgacagaggtagtaacccgtgtgag
gacgttatcgataacaagagcatttcaagcaggtcagaaagagttctatcaccagagaaa
gctggtgatgaaatgaaaagccttgaatccccagaaggtaacaaagaatcaaactccgtc
aaggttgttagaggagtaaaagttgtttcgggaaggacgcggtcattggttgagaggttt
gaaagaggagaaaaagttactcatactgaagataaagcagccagtgcaacaatagttcag
agctctgatgctgtagaggaagaaccccagacagcatcagtacaggcagtcagtatgacg
cccacccaggtaatgccagttaaacttgatcaggcaactaactcgatgccagttgaagtt
tctgtgttatcaacacgacgaactaggagtactccagtcagagtgatgcctgtggtactc
ggtcgggacacttatatggcaactgatgagcctcctgtaacatcaacacgacctgatagg
acttcttctactaatttggcatctgatgtgtcttgtgtaacatctacacgacaacctagg
actttaccagctccagttatgcctgagatagtcgatcagatatcaaatatggaatctaat
gagcctcctgtaacatcaacacaacctgataggacttctactattttgacatctgatgag
tctgatgtaacatcaacacgacaagctaggacgtctccagctccagttatgcctatgata
ctcaatcagacatcaaaaatgaaatctgatgagcgtcctgtaacatcaacacgacctgat
aggtcttcagctactaatttgatatctgatgagtctcctgtaacatccacccgacaagct
aagacttctccagccctagttacgcctgtgatactcaatcagcgtaaaaaaactaacatg
aaatctgatgagcctcctgtaatatcaacaagacaagttaggaccacttcagcgcgagta
atgcctgtgatacttaatcaagcatctaatacatatgatgagcgtcctgtatcatcttca
cgatcagctaggacgtctccagcccgtgtaatgacaatgaaactcactcaagtagaaaat
atgccatcttatgagcctcaagttgcattaacacgatcagctaggaactctcctgcccgt
gtaattcctgtgagaaacagtcaagcaagtaacttgacatctaatgcatctaatataaga
tcaaggcaacgatatagcccaacgcaaacactgtcaacacctgcagcacttgatcaggtg
actgatatgacactggatgaggcatatatatcagaaacgcaaccagcttctgatattttg
acccagaaagaagagcctcagatatctgggagggagaatgatggtgacatttgggagact
ttaatggaaacgcataatgaggtgttaaacactcttcaatcaaggttaacaaaattacag
attgtaagacatttttgggaacgtagtgatattaaaggtgcgatcatggccttgagaaag
ctgtcagatcactctgttcaagcagatgtgatcagtattctgactgacaaaacagagatt
ttaacattggatctgttttctcagttagcacccgtcctcacaggcttgttgggcagcagg
actgagaggcctgtaaatgtctccttggaaatgctcttgaagcttgtagcagtgtttggt
acagtaatacaatcaactgtttcagcacgacgagttgttggcgttgatcttcatgcagaa
gaaaggttacagatctgccaaagttgttctgctgaattgcaaaaggttcacaagattctt
ccactactcacaaggcgaggtggtctcatagcaagaaaggctcaagaactaaacctagtt
cttcaaacaccatag
DBGET
integrated database retrieval system
