Capsella rubella (pink shepherd's-purse): 17895598
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Entry
17895598 CDS
T02984
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17895598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17895598
Spliceosome [BR:
crb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
17895598
Complex C
U5 SnRNP specific factors
17895598
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
17895598
NCBI-ProteinID:
XP_006300376
UniProt:
R0HTU3
LinkDB
All DBs
Position
Unknown
AA seq
2361 aa
AA seq
DB search
MWNNDGTPLAPPGTGGSMMPPPPAAHPSYTALPPPSSNPTPSAEPTPEEAEAKLEEKARK
WMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVP
HAVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKR
DRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKT
KLINGPSYRRWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGP
KFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMV
MYIKTEDPDLPAFYYDPLIHPISNTNKEKRERKVFEDDDEDDFALPEGVEPLLKDTQLYT
DTTAAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYV
LNELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNY
LHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLA
DGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWR
VWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLD
AMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAH
YNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVH
WLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPH
EALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL
FPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNR
LLRLVLDHNIADYVSAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQFYGLLLDLLLLGL
TRASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFSHEEARDLIQRYLT
EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFV
SVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAVAFLRVDD
EHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENK
IQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFR
SGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDR
GIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDV
IQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRF
TLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLC
QVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDMFDQ
KASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSA
FGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSN
QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG
QLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQ
ACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLL
KPDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGA
EITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWR
VRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYGISPP
DNPQVKEIRCVVMVPQWGSHQQVHLPSSLPEHDFLNDLEPLGWLHTQPNELPQLSPQDVT
SHSRILENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQTGYEWGRLNKDTGSNPHGYLPT
HYEKVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVSMKYSVKLGSPKEYYHEEHRPTHF
LEFSNMEEADIVEGDREDTFT
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacgatggtacgcccttagctcctcctggtaccggtggctccatgatgcct
ccacctcccgctgcacatccttcttacacggcgcttcccccgccttcttctaatccgacc
ccttcggcggagcctactcctgaggaggcggaggccaagcttgaggagaaggccagaaaa
tggatgcagcttaattcgaaacgctacggcgacaagaggaagtttggattcgtggaaact
cagaaggaggacatgccaccggagcacgtcaggaaaatcatcagggatcatggtgatatg
tcatccaagaaattccgtcacgacaaacgtgtataccttggagcccttaagttcgttccg
cacgctgttttcaagctcttggagaatatgcctatgccttgggagcaggttcgagacgta
aaggttttgtaccacatcactggagctattacatttgtgaacgagataccatgggtcgtg
gaacctatttacatggctcagtggggtactatgtggattatgatgcgaagggagaagagg
gatcgtcgtcatttcaagagaatgcggtttccaccatttgatgatgaggagcctccacta
gactatgcagacaacttgttggacgtggatcctcttgagccaattcagttggagctggat
gaggaagaagattctgctgtatacacttggttttacgaccacaagcccctagttaaaaca
aaactgattaatggtcccagttaccggaggtggaacctctcacttccaattatggcaacc
cttcacaggcttgcaggccagttgctgtctgatttgattgatcgcaactacttctacttg
tttgacatgccatctttcttcacagcaaaggctctgaacatgtgcatacctggcggacct
aagtttgaacctttgtaccgtgatatggagaaaggagatgaagactggaatgagtttaat
gacatcaacaagcttatcattcgttcccctctgcgaactgagtacagaatagcttttccc
catctctacaataatcggcccaggaaagtcaaactctgtgtgtatcacagtcctatggtt
atgtatatcaagaccgaggatcctgatcttcctgcattttattatgatccgttaattcac
ccgataagcaacactaacaaggaaaagcgtgaaaggaaggtttttgaggacgatgatgag
gatgactttgccttaccagaaggcgtggaacctttgctaaaagatactcaactctacact
gacactacagctgctggcatttcattgttgtttgccccacgacctttcaatatgaggtct
ggaagaacacgtcggtcagaagatattcccttggtgtcagagtggttcaaggagcactgt
cctccagcctatccggttaaagttcgggttagttaccaaaagctattgaaatgctatgtt
ctgaatgagttgcaccatcgaccacctaaagctcagaagaagaagcacttgtttcgatct
cttgcagctacaaaatttttccaaagtaccgaactggattgggttgaagtgggtctgcaa
gtctgtcggcaggggtataatatgctgaatctattaattcacagaaagaatttgaactac
ctgcatcttgactacaacttcaacctcaagcctgtgaaaactttgaccaccaaagagcgt
aagaagtcacgttttgggaacgctttccatctctgccgtgagatcctccgtctgacaaaa
cttgtagttgatgcaaatgtccaattccgacttggtaatgttgatgccttccaattggct
gatggtctgcaatatattttctctcatgttggccagttgacgggtatgtatcgttataaa
tacagactgatgaggcagattaggatgtgcaaggatttaaagcacttgatatattaccgt
ttcaatactggtcctgtgggtaagggtccagggtgtgggttttgggctccaatgtggagg
gtatggttgtttttccttcggggaatagttcctcttcttgaaagatggctagggaatctt
cttgcacgtcaatttgaggggcgtcattcaaaaggagtggccaaaacagtcacaaaacag
agagtggaaagtcattttgatttggaacttcgagctgctgtcatgcatgacgtccttgat
gccatgccagagggtatcaagcaaaataaagcgcggactatattgcagcaccttagtgag
gcatggcggtgctggaaagctaatatcccatggaaggtccctggtttacctgttccaatc
gagaatatgatcctccgttatgtcaagtcaaaggctgattggtggacgaatgttgctcac
tataatcgtgagcgtatccgaagaggggctactgttgataagacagtttgtagaaagaat
cttggaaggttgactcgtctttggctaaaggcagaacaggaacgacagcacaattacctg
aaagatggtccgtatgtcactccagaagaagcacttgcaatttatactacaactgtacat
tggttggagtcaaggaaattttctccgattccatttcctccattgtcttacaaacatgac
acaaagttgctcatccttgcccttgagagactgaaggaatcatatagtgtagctgtgagg
ttgaaccagcagcagcgagaagagctcggtctaattgaacaagcttatgacaatcctcat
gaagctctatcacgaataaaacgtcatcttctcacccaacgtggctttaaagaggttggc
atagagtttatggatctatatagctacttgattccagtttatgaaatagagcctcttgag
aaaattaccgatgcctatcttgatcaatacttgtggtacgaaggggacaagcgccacttg
tttccaaactggattaagccagcagactcagagcctcccccacttctggtttataagtgg
tgtcaaggtatcaacaatttgcaaggcatatgggacacaggtgatgggcagtgtgtggtg
atgctccaaactaagttcgaaaaattctttgagaagatcgatttgacaatgttgaacagg
cttcttcgtttggttcttgaccacaatatcgcagactatgtgtctgccaagaataatgtg
gtcctgtcttacaaggatatgagccatactaactcgtatggtctcattaggggactccag
tttgcatcgtttgttgtgcagttttatggtcttttgcttgatcttttgcttcttggtttg
actcgagcgagtgaaattgctggaccacctcaaatgcctaacgagtttatgacgttttgg
gatacaaaagtggagacacgccatcccataagactctattctcggtatatagacaaagtt
catatcatgtttaaattttcccatgaagaggctcgggatcttattcagcggtatcttacg
gagcatcctgatcccaacaatgaaaatatggtgggatacaacaataagaagtgctggcca
agagatgcgaggatgaggttgatgaaacatgatgtcaatcttggcagaagtgtcttttgg
gacatgaagaaccgtcttcctcggagcatcacaactttggaatgggagaatggctttgtc
tctgtttatagcaaggataatcctaacctgctctttagcatgtgtggatttgaagtccgc
atactcccaaaaatcaggatgacccaagaagctttcagcaacacaaaggatggtgtttgg
aatctgcaaaatgaacagaccaaggagaggactgcagtagcttttctgcgggttgacgat
gaacatatgaaggtgtttgagaatcgggtgaggcagatccttatgtcatcaggatcaaca
acctttaccaagatcgtcaacaaatggaatacagctctaattggtctcatgacttacttc
cgcgaagccaccgtgcacacgcaagagctcttggatctactggtcaagtgtgagaataaa
atccaaacaaggattaagattgggttgaactcaaagatgcctagtcgatttcctcctgtt
atcttctacactccgaaggaaattggtgggcttggaatgttgtcaatgggtcatatattg
atcccacaaagtgaccttcggtacagcaagcagacagatgttggtgtaacccactttagg
agtggaatgagccacgaggaagatcagcttataccaaatctttaccgttacatacagcca
tgggaaagtgagtttattgattcacagcgggtgtgggcagaatatgctttaaagaggcag
gaagcgcaggcccaaaataggcgtcttacactggaagatctggaagattcttgggatagg
ggaattcctcgtatcaatacactgtttcagaaggataggcacacattggcgtatgataaa
ggttggagggttcggaccgactttaagcagtaccaagtccttaaacaaaatcctttctgg
tggacacaccagaggcatgatgggaagttgtggaacttgaacaattaccgcactgatgtc
atccaagcacttggaggtgttgagggtattcttgagcacacgttattcaaggggacatat
ttccctacatgggagggtcttttctgggagaaggcatctggttttgaggagtcgatgaaa
tataagaagttgactaatgcgcagaggtctggtctgaaccagattccaaatagaagattc
acactttggtggtcgccaacaattaatcgagccaatgtctatgtgggtttccaagtgcag
ttggatctgacaggaatatttatgcatggaaagattccgacacttaagatatctttgatc
caaattttccgtgcccatctgtggcagaagatccatgaaagtgttgttatggatctttgc
caagtattggaccaagagttggacgctttggaaatagaaactgtgcagaaggagacaatt
catccaaggaagagttataagatgaacagctcttgtgctgatgttcttctctttgctgct
cataaatggccaatgtctaaacctagtctggttgctgagtctaaggatatgttcgaccag
aaagctagtaacaaatattggatagatgtgcaacttcgatggggagattatgactcccat
gatattgagcgttataccagggccaaattcatggattatacaactgataacatgtctatc
tatccatctccaacaggtgtaatgattgggcttgatctggcatacaacttgcattctgcc
tttggtaattggttcccaggttcaaaacctcttcttgctcaagcaatgaacaagatcatg
aagtcaaatccggctctatatgttctgagagagaggataaggaagggtttgcagttatac
tcgtctgagcctacagagccatatttgtcatctcaaaactatggtgaaatattcagcaat
caaattatatggtttgttgatgatacgaatgtttatcgtgtcacgattcacaagacattt
gaaggaaatttaacgacgaagccaatcaatggtgcgattttcattttcaatccaagaact
gggcaactgttcctgaaggttatccatacaagcgtttgggctggtcaaaagcgtcttggc
cagctagcaaaatggaaaactgctgaagaggttgctgcacttgtgcgatctctccctgtt
gaagaacagccaaaacaaattattgttacgcggaaaggaatgttggatccccttgaggtt
cacttgctggatttccctaatattgttatcaagggaagcgagctgcagcttccattccag
gcctgcctaaagatagagaaatttggtgacctgattttgaaggccacagaaccgcagatg
gtcttgtttaatatatacgatgattggttgaagagtatttcttcgtatactgctttttca
agacttattttgatcctacgtgcgcttcacgtgaataatgagaaggctaagatgttgttg
aagcctgacaagtctgttgtcactgagccacatcacatctggccctctctcactgatgat
caatggatgaaggtggaggtagcacttagagatcttatcctctctgactacgcaaagaag
aacaatgtgaatacctcagctttgacacaatcagagatcagagatattattcttggtgct
gagattactccaccctctcaacagaggcaacagatagctgagattgagaaacaggcaaag
gaagccagccagcttactgcagtcacaacaagaactacgaatgttcatggtgatgagctc
attgtcaccaccacgagcccttatgagcaatctgcattcggttccaaaacagattggcgt
gtacgtgcaatatcagctactaacctttacctcagagtcaatcacatatatgtgaattca
gatgacataaaggaaacgggatacacctacatcatgccaaagaacattttgaagaagttc
atatgtgtagcggatcttcgtactcaaattgctggatatttgtatggtattagtcccccg
gataatccccaagtgaaggaaatccgttgtgttgtgatggtgccacagtggggaagtcat
caacaagttcacctgccatcttctcttcctgagcatgacttcctaaatgatcttgagccc
ttgggatggttgcacacacagcctaacgagctgcctcagctgtcaccacaggatgtaacc
tctcattcgcgtattctggagaacaacaagcaatgggatggagaaaaatgcatcattttg
acctgcagtttcactccaggctcctgctctttgacgtcatataagttgacccaaactgga
tatgaatgggggcggcttaacaaggacacaggcagcaatcctcatggttacctacccacc
cattatgaaaaggttcagatgttgttgagtgacaggttcctcgggttttacatggttcct
gagaatggtccttggaactacaacttcatgggagtgaagcacacggtgagcatgaaatac
agtgtcaaactcggctccccaaaggagtactatcacgaggagcatcggcccactcatttc
ttggagttcagcaacatggaggaggctgacattgtggagggagatcgtgaggacacgttt
acttaa
DBGET
integrated database retrieval system
