Capsella rubella (pink shepherd's-purse): 17896083
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Entry
17896083 CDS
T02984
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04120
Ubiquitin mediated proteolysis
crb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
17896083
04120 Ubiquitin mediated proteolysis
17896083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crb04121
]
17896083
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
17896083
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
17896083
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
Prok-RING_4
zf_RING_Vps8
zf-HC5HC2H
zf-RING_Vps41
PHD_NSD
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
17896083
NCBI-ProteinID:
XP_006302238
UniProt:
R0GHF2
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MIQLKVYAGLSTLAALAVIYHAFSSRGQFYPATMYLSTSKINLVVLLNMGLVLMLSLWNL
VKIVFLGSLREAEVERLNEQAWRELMEILFAVTIFRQDFSVGFISLVVTLLLIKSLHWMA
QKRVEYIETTPSVTLLSHVRIVSFLVFLLVLDCLLTYSSIRQLIQSPKASMSVFFTFEYM
ILATTTVSIIVKYAFYVTDILKEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNHG
LPLHLIRELYETFRNFKIRVTDYLRYRKITSNMNDRFPDATPEELSSNDATCIICREEMT
TAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPADNATSTASGNRGAPQESLQQGIGT
SSSDGQGSSVAAAANENMSRHEARLQAAASAASIYGRSIVYPSSANTLVWPQGYPQAELE
AQRSYFESQIEVLQNQLHLLEKPTTVDTKGKSVAETAEMNH
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgattcagctaaaggtttacgcaggacttagtaccttggcagcattagctgtgatttac
catgcttttagtagcagaggtcaattttacccagcgactatgtatctatcaacgtccaag
atcaatttggtggttcttctcaacatgggtttggttctaatgttgagtttatggaatcta
gtcaaaattgtgtttctgggttctcttagagaagctgaagttgagcgtttgaatgagcaa
gcgtggagagaactcatggagattctatttgcagtcactatttttagacaggacttctct
gttgggtttatttctttggttgtgactcttttgttgatcaagagtttgcattggatggct
cagaagagagtggagtatattgagactactccttctgttactttgctctctcatgttcgt
attgtttcttttttggttttccttcttgtcttagattgtctccttacgtatagttctata
cggcaattgattcagtctccaaaagcttctatgtctgttttcttcacgtttgagtatatg
attctggcaacaacaactgtttcgattattgtaaagtatgccttctatgtcactgatata
ctcaaggaaggtcaatgggaaggaaaaccagtatacactttctatctagagcttgttcgt
gacttgcttcacttgtccatgtatctttgcttcttccttatgatattcatgaaccatggc
cttccattgcatctgatacgggagctctacgaaacattcagaaacttcaaaattcgtgtg
accgattacctgcgttatcgcaaaatcacttctaatatgaatgataggtttcctgatgcc
actcctgaagaactgagttcaaatgatgccacttgtatcatatgtcgtgaagaaatgacc
acagcaaagaaattagtatgtggccatctatttcatgtgcattgtcttcggtcatggttg
gaacgacaaaacacatgtcccacctgcagagcactggttgtgccagctgacaatgctaca
tcaaccgcttccggaaaccgtggagcaccccaagaatccctgcagcagggaattggtact
tcaagttcagatggccagggatcttcagtagctgctgctgccaatgagaatatgagcaga
cacgaagctaggttacaggctgctgcttcagcagcctccatatatgggagatccattgtg
tatccatcttctgcaaacacactagtatggcctcaaggttatcctcaggcggagctagaa
gcgcagaggagttatttcgagtcccagatcgaggtcttgcaaaaccaacttcatcttctg
gagaaaccgacaactgtagatacgaaaggaaagtctgtcgcggaaactgcagaaatgaac
cattaa
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