Capsella rubella (pink shepherd's-purse): 17896738
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Entry
17896738 CDS
T02984
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
17896738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crb03400
]
17896738
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
17896738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
DUF5041
Motif
Other DBs
NCBI-GeneID:
17896738
NCBI-ProteinID:
XP_006303163
UniProt:
R0GJZ4
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MARNREGLVLLLDVGPAMHSVLPDVEKACSLLLQKKLIYNKYDEVGIVVFGTEETANELA
TEIGGYEHVKVLRNIRVVDEVVAEHVKHLPRGTVAGDFLDALIVGMDMLIKIYSGGQKGK
KRMCLITNAACPTKDPFEGTKDDQVSTIAMKMAAEGIKMESIVMRSSLSGDAHEKVIEEN
DHLLNLFSSNAIAKTVYVESPLSLLGSLKTRRVAPVTLFRGDLEINPTMKIKVWVYKKVA
EERLPTLKMYSDKAPPTDKFAKHEVKIDYDYKLTAESTQVIAPEERVKGFRYGPQVIPIS
PDEIETLKFKTDKGMKLLGFTEASNILRHYYMKDVNIVVPDPSKEKSVLAVSAIAREMKQ
TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFNKLP
SSWKPDEQQQAVADNFVKMLDLAPSPKEEVLNPDLTPNPVLQRFYEYLELKSNSTDAVLP
PMDETFKRIMEQDPELSSNNKSIMDAFCGSFDVKKNPKLKKASKRLLRDKPSGSDDEDNR
MITYDAKENKIDIVGDANPIQDFEAMISRRDNQDWTNKAITQMKTQILKLVENCTDEGDK
ALECLLALRKGCVLEQEPKQFNEFLNHLFKLCQERKSSHFLKHFTSKKITLIPKSEAADS
DVVDENVGDFTVKQEPML
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaatcgggaagggttagttttgttgctcgatgttggtccagcgatgcatagt
gttctccctgatgttgaaaaggcatgttctttgctactacagaagaagttgatttacaac
aagtatgatgaagttggcattgttgtatttggaactgaagaaactgcaaacgagcttgct
acggaaataggtggatatgagcatgttaaagttttgaggaatataagagttgttgatgaa
gtcgttgctgagcatgtaaagcacctccctcgaggaaccgtagctggcgactttcttgat
gctttgattgttgggatggatatgcttataaagatttatagtggtgggcaaaaggggaag
aaacggatgtgtcttatcacgaatgcagcttgtcctaccaaagatccatttgaaggaacg
aaagatgatcaagtcagtactatcgctatgaaaatggctgcagagggtataaagatggaa
agcattgttatgaggtccagtttaagtggtgatgctcatgagaaagtgattgaggagaat
gatcatttgttgaatttgttctccagcaacgccattgctaaaacagtttatgttgagagt
ccactctcactgctaggttccttaaagacccgaagggttgctccagttactttgttcagg
ggtgaccttgaaattaacccaacaatgaagattaaggtgtgggtttataagaaagtggct
gaggagagacttcccactctaaaaatgtattctgacaaagcgcctccaactgacaagttt
gccaaacatgaagtgaaaattgattatgattacaaacttactgcagaatctactcaggtt
attgctccagaagaaagggtcaagggctttcgctatggacctcaggttattcctatatca
ccagatgagatagaaacactcaagtttaaaactgacaaaggcatgaagcttctgggattt
actgaggcatcaaacatactacgacactattacatgaaagacgtgaatatagttgttcct
gacccgagcaaagaaaaatctgttcttgccgtctcagccattgcaagagaaatgaagcaa
acaaacaaggtggcaattgtacgttgtgtctggagaaatggacaaggcaatgtggttgtt
ggggtcctgactccaaatgtgtctgaaagagatgacacccctgattcattttacttcaac
gtgctacctttcgccgaggatgtccgcgagtttccatttccttctttcaacaaacttccg
tcatcatggaagccagatgaacaacagcaagcagtagcagataattttgtcaagatgctt
gaccttgcaccttctcctaaagaggaagtactaaatcctgatcttactcctaacccggtt
ttgcagcgtttttatgaataccttgagttgaaatcaaattccacggatgctgttttacct
ccaatggatgaaactttcaagagaattatggagcaggatcctgaactctcttccaacaat
aaatccataatggatgcgttctgtggaagttttgacgtcaagaagaatccaaagttgaag
aaggcttctaagagattgttacgagataaaccatcgggttcagatgatgaagacaatcgc
atgattacttatgatgccaaagagaacaaaattgatatagtcggagatgcaaacccaatt
caagattttgaagccatgatatcccgcagagataaccaagactggaccaataaagcaatc
acacaaatgaaaacccaaatattaaaactcgtagaaaattgtaccgatgagggtgacaaa
gcattggaatgtctactcgctcttcgtaaaggctgtgtcttggagcaggaaccaaagcaa
ttcaatgagttcttgaaccatctattcaagttatgccaagaaagaaagtcatcgcatttt
ctcaaacatttcacgtcaaagaagatcacgttgattcccaaatccgaagcagcagacagt
gatgtggtagacgagaacgttggggatttcaccgttaaacaagagccaatgctttag
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