Capsella rubella (pink shepherd's-purse): 17896941
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Entry
17896941 CDS
T02984
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03013
Nucleocytoplasmic transport
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
17896941
03015 mRNA surveillance pathway
17896941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17896941
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
17896941
mRNA cycle factors
P-body specific factors
17896941
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
17896941
NCBI-ProteinID:
XP_023646067
LinkDB
All DBs
Position
Unknown
AA seq
474 aa
AA seq
DB search
MKEPVQKKKVVVRHLPPSLSQSDLLSQIDPRFGDRYNWVSFRPGKSSYRNQKCSRAYVAF
EEPEDVYEFAAFFNGHVFVNEKGAQYKAIVEYAPSQRVPTPADKKDLREGSISKDPDYLE
FLKLIAQPVENLPSAEIQLERREAEQSGASKAAPIITPLMEFIRQKRATVMGSQGLSDVR
RGGRRARAVSTNKPSPRPSKRNSEKKKYVEKESTKILSRKATLDIGSSKQEYHKQEIPEK
DTASAIDSSLPGIALTMDSGKKKILLLKPKDRDNPDNPPPQPEINLSASRQNQKIDVGGR
LIKRILLKNDSRPSQASTFVKPEPRVEPSEGENFKRPARPANTRAGKDYHASGTNSEKQE
RRTRNKDRPDRVVWAPLRRDGSNISEDQSLSSAANNGEVKERIYSQRSGEVVNSSGGHTL
ENDSTRHSSRRVGGRNRKEDVMTGEGKSSRRGGGGGGSNSHEKQMWIQKSSSGT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaacctgtacagaagaagaaggtggttgttcgccacttgcccccttctctttct
cagtccgatctcttgtctcagattgatcctcgtttcggtgatcgttacaattgggtttcg
tttcgtcccggcaagtcaagctataggaatcagaagtgttcaagggcctacgtagctttc
gaggaaccagaagatgtttatgagttcgctgcatttttcaacgggcatgtgtttgttaat
gaaaagggtgctcagtataaggctatagttgaatatgcaccttcgcagcgtgtgccgaca
cctgctgataagaaagatcttcgcgaagggtctattagtaaggatcctgattatttggaa
ttccttaagttgattgctcaacctgttgagaatctccctagtgctgaaatccagttggaa
agaagagaagctgagcagtctggtgcttcaaaagcggctcctattattacccctcttatg
gaattcatacgtcaaaaacgtgctactgtgatgggatcccagggtttatcagatgtccga
agaggaggtagaagagccagagcagtttctactaacaagccaagtccaaggccctcaaaa
cgtaactctgaaaagaaaaagtatgtggaaaaggagagtacaaaaattctgtcccggaag
gctacattagatattggcagctctaagcaagaatatcataagcaggaaataccagaaaag
gatactgcctctgccatagatagctctctcccagggattgcattgactatggattctggg
aagaaaaagattttgctcctgaaaccaaaagaccgagacaatcctgataaccctccacca
caaccagaaattaatctttcggcttcaagacaaaatcagaaaattgatgttggagggagg
ttgatcaagagaatacttctgaaaaatgactcaaggccaagccaggcttcaacttttgtc
aagcctgagccaagagtagaaccctcggaaggagaaaacttcaaacgaccagctcggcca
gccaacactcgagcagggaaagattatcatgcttctggtaccaacagtgagaagcaagag
agacgtacaagaaacaaggacagacctgatcgtgttgtgtgggctcctcttcgtcgtgat
gggtccaatatcagtgaggatcaatcactatcttcagcagctaacaatggagaagtcaaa
gagaggatatattctcaaagatctggagaagtggtcaactcctctggtggacacactctt
gagaatgattctactagacattctagtcgtcgtgttggaggtcgcaatagaaaagaagac
gtgatgactggtgagggtaaatcatcccggagaggaggtggtggtggtggttctaattca
catgagaagcagatgtggattcaaaaatcatcatcgggtacttga
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