Capsella rubella (pink shepherd's-purse): 17896996
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Entry
17896996 CDS
T02984
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17896996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17896996
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
17896996
Spliceosome [BR:
crb03041
]
Complex A
U2 snRNP components
U2 related factors
17896996
Complex B
17896996
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
17896996
NCBI-ProteinID:
XP_006306614
UniProt:
R0IQM5
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MEEDKSKYRGDDMEVEEEDDDLKKSRRDRDRSKERKKDKGLEKRREKDRRKRRSERVKSS
DSEDDYDRDDDEEREKRKEKERERRRRGKERAKRRSERRKSSDSDVDDEEDNERDKRRSK
EKERGHREHERGKDRKRDRDREREERKEKEREREKNRERREREREEREKERVKERERRER
EDGERDRREREKERGSRRNRERGRSREVGNEESDDDVKPDLKRRRKESSERKEKEREKSV
GRSSRHADGNGDSPKRKSVEEDGEKKEKKTREEELEDEQKKLDEEVEKRRRRVQEWQELK
RKQEEAENEIKGDGDGKEPKAGKAWTLDGESDDEEGHQEEKSETEMDVDGESKPESGGDA
KIVDLENETATTVPESGGDGAADEDEIDPLDAFMNTMVLPEVEKLSNSAPSPAVNDGILD
SKMNGKDSGDQPKKGFNKALGRIIQGEDSDSDYSEPKDDDDPSLEEDDEEFMKRVKKTKA
EKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQEEVNAYRKELELKVHGKDVPRPIKSWHQ
TGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD
QPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFAKPLGIRCVPVYGGSGVAQQISELKRGT
EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQT
VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFFRLLELLGEW
YEKGKILIFVQSQEKCDALFRDMIKHGYPCLSLHGGKDQTDRESTISDFKTNVCNLLIAT
SVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVK
ALELSEQPVPDDLKAVADGFMAKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAK
EYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAIPVSAPVTANQLLP
NGSGIHAVPGVLPVTVPGNPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHYEAELEIND
FPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGPGERKLYLFIEGPSEKSVKT
AKVELKRVLEDITNQAMSLPGGATAGRYSVI
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagataagtctaagtacaggggagatgatatggaggtagaggaggaggatgat
gatttgaagaagagtcggcgagatcgtgatcgcagtaaggagcggaagaaggataagggt
ttggagaagcgccgggagaaggataggcggaagagacggtctgagagagttaagagtagt
gattcagaagatgattacgatagagatgatgatgaagagagggagaagcgtaaagagaag
gaaagagagcggagacggaggggtaaggagagggctaagcgacggtctgagagaaggaag
agtagtgattctgatgttgacgatgaagaagataatgagagggataaacgcagatcgaag
gagaaggagagaggacaccgagaacatgaaagaggcaaagatcggaaaagggatagagat
agagagagggaggagaggaaggagaaagaaagagaaagggagaagaatagagagagaaga
gaacgtgaaagagaagagcgggagaaggagagggttaaggaaagggaaaggcgggagagg
gaagatggagagagggataggagagaacgtgagaaagaaaggggtagtaggaggaaccgg
gaaagggggaggtcacgggaggttggcaatgaagagagtgatgatgatgtcaagcccgac
ttgaaacgtaggagaaaagagagcagcgaacggaaggagaaagagcgtgaaaagagtgtt
ggtaggtctagcaggcatgcagatggcaatggagatagtccaaagagaaagagtgtcgag
gaggatggtgaaaagaaagagaagaaaacccgagaagaagaactagaggatgagcagaag
aagttggatgaggaggtggaaaaacggaggagaagagtccaggagtggcaagaattaaag
aggaagcaggaggaagctgaaaatgaaattaagggtgatggggatggtaaagagcccaag
gccggtaaggcttggactcttgatggagaatctgatgatgaagaaggccatcaggaagaa
aaatcagaaacagaaatggatgttgatggggagagtaaacctgagagtggtggagatgcc
aaaatagtagacttggagaatgagacagctactactgtccctgagagtggaggtgacgga
gctgcagatgaagatgagattgatccattagatgcttttatgaatactatggtattacct
gaggttgagaagcttagcaatagtgctccttctccagcagtgaatgatggtattttggac
tctaaaatgaatgggaaggacagtggtgaccagccgaagaaaggttttaacaaggccctt
ggtaggataattcaaggtgaagattctgattccgattattcagaaccaaaagatgatgat
gatccaagtttagaggaagacgatgaggagttcatgaaaagagtaaaaaagaccaaagca
gaaaaattgtcccttgttgaccactcaaagatagagtatgaacctttccggaaaaacttc
tatatcgaagtgaaggatatctctaggatgacacaggaagaagttaacgcttacagaaag
gaattggagctgaaagttcatggaaaagatgttccaaggcccataaagtcttggcaccag
actgggctaaccagcaaaattttggatactatgaagaaacttaattatgaaaagccaatg
cctattcaaacacaagcgctacctatcatcatgagcggtcgagactgcattggggttgca
aaaaccgggtctggtaaaactcttgggtttgttttgccaatgctgaggcatatcaaagat
cagcctcccgtcgaggctggtgatgggccaattgggcttgtaatggcacctactagggag
cttgttcagcagattcacagtgatatcagaaagtttgcaaagccgttgggtatacgatgt
gtccctgtgtacggaggatcaggagttgcccagcaaattagtgagcttaagcgaggtact
gagattgttgtgtgcactcctggtagaatgattgatatcctttgcacaagcagtgggaaa
atcactaacctgcgaagggtcacatttttggtaatggatgaagctgatcgtatgtttgac
atgggttttgagcctcaaattactcgtattattcagaacattcgacctgaacgtcaaact
gtgctcttttctgccacgtttcctcgccaagttgaaactttggcacgtaaagtcttgaac
aagcctgtagaaattcaggttggtggaaggagtgttgtgaataaagatataactcagtta
gttgaagtcagaccggagagtgataggttctttagacttctggaacttcttggggaatgg
tatgagaaaggaaaaattctgatcttcgttcaatcgcaggaaaaatgtgatgccttgttt
agggatatgattaaacatggttacccttgtctatctcttcacgggggtaaggatcagact
gatcgtgaatcaactatatctgattttaagaccaatgtctgtaatctgttgattgccaca
agtgttgcggctaggggtctagatgtgaaagagcttgagttagttgtaaacttcgatgca
ccgaaccactatgaagactatgtacatcgcgttggcaggacaggcagggcagggcggaaa
ggctgtgctgtgacatttatttctgaggatgatgctaaatatgcaccagatttggtcaag
gccctggaactttctgagcagccagtgcctgatgatctcaaagcagttgctgatggtttc
atggcaaaagtgaaacagggtattgagcaagctcatggaactggttatggtggtagtggc
tttaaattcaacgaagaggaggaagaggttaggaaagcagcaaagaaagcacaagcgaag
gagtatggctttgaggaagataagtctgactcagaagatgagaatgatgttgtaagaaag
gcaggtggtggtgagatctcacagcagcaggctacttttgctcagatagccgccattgct
gctgctgccaaagctgctattcccgtgagtgctcctgtgactgctaaccagttgctgcca
aatggtagcgggattcacgccgtgccaggtgtccttccagttactgttcctggcaatcct
agtgaaggggcaggccgtgctgcagccatggttgctgccatgaatttgcaacataacctg
gcaaagattcaagctgacgctatgcctgaacactatgaagcagaacttgaaatcaatgat
ttcccacaaaatgctcgctggaaggtcacccacaaagaaactttgggtccaatatcagag
tggactggagccgccattaccactaggggtcagttttatcctacaggacgaatccctgga
cctggggaacgcaaactctacttgttcattgaagggccttctgagaaatcagttaagaca
gcaaaagttgaactcaagcgtgttcttgaagacattacaaatcaggccatgtcacttcct
ggaggagcaacagctggcagatactcggtgatataa
DBGET
integrated database retrieval system
