Capsella rubella (pink shepherd's-purse): 17897486
Help
Entry
17897486 CDS
T02984
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17897486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17897486
03012 Translation factors [BR:
crb03012
]
17897486
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17897486
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
17897486
Translation factors [BR:
crb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
17897486
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
ATPase
nSTAND3
AAA_19
T2SSE
AAA_16
Inos-1-P_synth
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
17897486
NCBI-ProteinID:
XP_006306606
UniProt:
R0IAT5
LinkDB
All DBs
Position
Unknown
AA seq
1198 aa
AA seq
DB search
MPYYSAIFRGHIRPNTVVGAASMFIQHSSVQLHQSPKLLLRPSSVVRSLHCRRSGGLVTH
SQRSRVLSVKAGRGDASSSTLGIEWRAANLPYFQRQNSSYGRIAYNDYESSDESDRDVGS
SQSQQMAGSTLDNIEQWRFKLTMLLRNKEDQEVVSRERKDRRDFDHISAMATRMGLHSRQ
YSKIVVISKSPLPNYRPDLDDKRPQREVVLPFGLQSEVDAHLHAFLDQKKTLIPEIPRPN
SNEGLSTDYGNYEKPETVMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMIEFRKTLP
AYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRIS
AISVSERVAAERGEQIGDSVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHV
VVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTY
PVRAHFLEDFLEKTGYRLTAYNQIDDYGEEKTWKMQKQAQFKKRKSSISSAVEDALEAAD
FKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKNQLEA
HSLLGDPNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDC
GKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQQP
ELLRTPLQSLCLQIKSLRLGSISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTAL
GKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFS
GRDYSDHLTLVRAYSGWKAAERTQSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLI
DNIEGCSKLSHDEHLVRAIICAGLFPGICSVVNKEKSITLKTMEDGQVLLYSSSVNGNVP
MIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLLLFGDKISSGGFDGHLKMLGGYLEFFMKP
TLAYTYLSLKRELDELIQNKLVNPKLDIQPYDKLMTAIRLLVSEDQCEGRFVYGRKALSP
KPTKNLKEVGTQLQNSGGENNKNQLQTLLARAGHGSPVYKTRQLKNNQFRAMVTFNGLDF
MGKPCGSKKNAEKDAAHEALLWLQGESKSSLNDLNHMSMLLKKNKSKKPARASSAKWG
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgccttactactccgcaattttccgaggacatatcagacctaacaccgtcgtcggtgct
gcctccatgtttattcaacatagctccgtccagcttcatcagagccctaaattgttgtta
agaccttcatctgtggttaggtctcttcattgtcggaggtcaggtgggttggttacgcat
tctcagaggtcgagggtcttgtctgtgaaagcaggtcgtggtgatgcttcttcttcgact
cttggaatagagtggagagcagctaatttaccatactttcagaggcagaactctagctat
gggcgtattgcttacaatgactacgaatcaagcgatgagtcggaccgagatgttgggtct
tctcagtctcagcaaatggcgggttcgactcttgataatattgagcaatggaggtttaaa
ctaactatgcttctccggaacaaagaagaccaagaagttgtgtcaagggagagaaaagat
cggcgtgattttgaccatatctcagctatggcaaccagaatgggattacacagccgtcag
tattcaaagattgttgtcattagcaaatctcctttgccaaattatagacctgaccttgat
gataaacgtccacaaagagaggtggtcttgccttttggtctacaaagcgaagtggatgcc
catctacatgctttcctcgatcagaaaaaaacattgattccagagattcccaggccaaat
agtaatgaaggtttgtcaaccgattatggaaactatgagaaaccagagaccgtgatgcaa
aatagtcttgccagggaaagaatactccgtccaagaagcctacaactgaggagcaagcaa
cagcaatgggtggattctccagaaggccagaaaatgatagagtttcgcaaaacccttcct
gcttacaaagagaaagatgctctgctgaaagccattgcagcaaaccaggttgtagtggtt
tctggagaaactggatgtggtaaaacaactcagcttccccagtacatattagaatctgag
atcgaggctgcccgtggagcttcatgcagcatcatatgtacccagcctagaagaatatct
gctatttctgtttctgaacgagttgctgcagaacgtggagaacaaataggagattctgtt
ggctacaaagtgcggcttgaaggaatgagaggcagagatacacgtctacttttttgtaca
actggtgttttacttagaaggttacttgtggatcgtagtctgaagggtgtgactcatgtt
gtagttgatgagattcatgaacgtgggatgaatgaagatttccttcttatcgtcctgaaa
gatctcttacctcgtcgacctgacctaaagctgattttaatgagtgctactttgaacgct
gagctcttttcttcttactttggtggtgcaccagccatgcatatcccaggttttacatac
cctgtccgagcccatttcttggaggatttccttgagaagactgggtacaggctgacagca
tataatcaaattgacgattatggtgaggaaaagacatggaagatgcagaagcaagctcaa
ttcaagaaaagaaaatcctctatatcttctgctgttgaggatgctcttgaagctgcagac
ttcaaaggatacaactttcgtactagagattctttgtcatgctggagtcctgattcaata
ggctttaacctcattgagaatgtgctttgtcacatcgtcaaaggagagagacctggtgct
gttttggtattcatgaccggttgggatgatataaactccttaaagaatcagcttgaagct
cattctcttctaggagatccgaacaaagttttgttgcttgcctgtcatggatccatggcc
agctctgagcagaggctgatttttgatagacctccagaaggaattaggaaaatagtgctg
gccaccaatatggctgagacaagtatcaccatcaacgatgtcgtatatgtcattgattgt
ggtaaagcaaaagagacgtcttatgatgcccttaacaatacgccttgtctccttccatct
tggatttcgaaggcagctgctcgccaaagaagaggaagagctggtcgtgttatgcctgga
gaatgttatcacctctatcctagatgtgtctatgatgcttttgctgactaccagcagccg
gaactccttaggacaccgttgcagtctttatgtcttcaaattaaaagcttaagactcgga
agcatttcagagttcctttccagggcattgcaacctcctgaagcactatcggtccaaaat
gctgttgagtatctaaagatcattggggctcttgatgacgatgaaaatttaacagcttta
gggaaaaatctgtctatgcttccggtggagccgaaacttggaaaaatgcttattttaggg
gctatcttcaactgcctagatccagtaatgacagttgtagctggtctaagtgtcagagac
ccattccttatgccatttgacaaaaaagatctggcagaaacagcaaggtccaagttctct
ggccgtgattacagtgatcatttgacattagttcgagcatacagtggttggaaagctgct
gaaagaacacagtctgggtatgattactgctggaagaactttctctcatctcaaactctt
aaggccatggactctatgcgtaaacaattcttcaatctcctcaaggaagcatctctgatt
gataacatagaaggttgcagtaagctgagtcatgatgaacatcttgtccgcgcaatcatt
tgtgctggcctgttccctggaatttgttctgttgttaataaggaaaagtcaatcacgctc
aagacaatggaagatggacaagtgcttctatactcgagttctgtgaatggcaatgtacca
atgattcccttcccttggctagtcttcaacgacaaagtgaaagtcaattctgtgttcctg
cgcgactctactgctgtatctgactctgtgcttcttttgtttggagataaaatctcttcc
ggtggatttgatggtcatctcaaaatgcttggaggatatctagagtttttcatgaaacct
actttagcatatacatacctttcgttaaaaagagagctcgacgaacttattcaaaataag
cttgtgaatccaaaacttgatattcaaccatacgacaaacttatgactgccattagatta
cttgtgtcggaggaccaatgtgagggcagattcgtctatgggcggaaagctctaagccct
aaaccgacaaagaatttaaaagaagtagggactcagctgcagaacagcggcggtgaaaac
aacaagaaccaacttcagacattgctcgcccgagcaggacacggatcacctgtgtacaag
acaagacagcttaagaacaaccagttccgtgctatggttaccttcaatggattggatttc
atgggaaaaccatgtggtagtaagaaaaatgctgagaaggatgcagctcatgaggctttg
ttgtggttacaaggggaatccaagtcgagtctgaatgaccttaatcacatgtcaatgctc
ttgaagaagaacaaaagtaaaaaacctgcaagggcatcatcagctaaatggggttaa
DBGET
integrated database retrieval system
