KEGG   Capsella rubella (pink shepherd's-purse): 17897564
Entry
17897564          CDS       T02984                                 
Name
(RefSeq) lysine-specific demethylase JMJ18
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:crb00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:crb01009]
    17897564
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crb03036]
    17897564
Enzymes [BR:crb01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     17897564
Protein phosphatases and associated proteins [BR:crb01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     17897564
Chromosome and associated proteins [BR:crb03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    17897564
SSDB
Motif
Pfam: JmjC FYRC JmjN zf-C5HC2 FYRN KDM5_C-hel Tad2-like Panoramix_cons
Other DBs
NCBI-GeneID: 17897564
NCBI-ProteinID: XP_006306751
UniProt: R0IB33
LinkDB
Position
Unknown
AA seq 823 aa
MDNLSVAPSESEIKEDMSLKNHPPDKDKDKDTIMEPPSSPRHRKVVARWLPDEAQRPMID
DAPVFTPSLEEFEDTLAYIEKIRPLAEPFGICRIIPPSTWTPPCRLKEKSIWEHTKFPTR
IQNVDLLQNREPMKKKPKSRKRKRRRNSRMGSSRRRSGSSPSESTSSPEAEEKFGFNSGS
DFTLDEFEKFALHFKDSYFEKKDSSGDIVRWTPSVDDIEGEYWRIVEQPTDEVEVYYGAD
LENGVLGSGFYKRAEKLASSDMDQYTVSGWNLNNLPRLPGSVLSFEDCDISGVLVPWLYV
GMCFSSFCWHVEDHHLYSLNYHHFGEPKVWYGVPGSNATALEKAMRKHLPDLFDEQPDLL
HGLVTQFSPSILKDEGVQVYRVVQNAGEYVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLA
HGQNAVELYSKETRKTSLSHDKLLLGAAYEAVKALWELSASAEKKNTTNLRWKSFCGKNG
TLTNAIQARLQMEEERIAALGRDSSSLMKMEKDFDSSCERECFSCFYDLHLAASGCKCSP
EEYACLKHADDLCSCDEKDGFILVRYTMDELSSLVRALEGESDDLKIWASKVLGIELSDE
DQTKTSSVISQEKKLKEGSFDLNIDLELDCQEDLKEEASTSGGELTSSENLGVSVEPINL
GVLIFGKLWCNKHAIFPKGFRSRVKFYNVLDPTRMSTYISEVLDAGLMGPLFRVTLEESP
DESFFNVSAQQCWEMVFQRVKDTRTSLGLPSLPQLEGGINGLQMFGFLSPSIVQAIEALD
PNHRLVEYWNHKNQASADSKDHFITSNCSVSLTKGKLFGVDLM
NT seq 2472 nt   +upstreamnt  +downstreamnt
atggacaatctcagcgttgctccatcagaatctgagatcaaagaggatatgtctttgaag
aatcatcctccagacaaggataaggacaaggacacaatcatggaaccacctagtagtcca
cgtcataggaaggttgttgctagatggttacctgatgaagcgcagaggccgatgatcgat
gatgctcccgtgttcaccccatcgttagaggagtttgaagatacacttgcttatattgaa
aagatacgtccactagcagaaccgtttggtatctgtcgaatcatcccaccatcgacatgg
actcctccttgccggcttaaggagaagagtatatgggagcatacaaagttccccactcgg
attcagaacgtggaccttcttcagaaccgggagccgatgaaaaagaaaccgaagagcaga
aagcggaaaaggagaagaaactcaagaatgggttcttctaggagacgatctggttcttct
ccttctgaatcaacttcatctcccgaggctgaggagaaatttggcttcaattctggttca
gacttcactcttgatgagtttgagaaatttgctctgcattttaaagactcatacttcgaa
aagaaagactctagtggagatatagtaagatggacaccgtccgttgatgatatagaaggc
gaatactggcgtatagtagagcaaccaacagatgaagtagaggtatactatggtgctgac
ttggagaatggggtacttggaagcgggttttataaaagagcagaaaagttagccagtagc
gatatggatcagtacacagtttctggctggaacttgaataacttaccacgtctccctggc
tctgtactctcttttgaggattgtgatatctccggagttttagttccatggctttatgtg
ggaatgtgtttttcatcattttgttggcatgtggaggaccaccatttatattcactgaac
tatcatcactttggggagccaaaagtatggtatggtgttccaggaagcaatgcaacagct
ctcgagaaggcgatgaggaaacatctacctgacttgtttgatgaacagcctgatctactt
catggcctggttactcagttttctccttcaatcctgaaagatgagggagtccaagtttac
cgggtggttcagaatgcaggggagtatgtactgacattcccgagggcgtatcatgctggg
ttcaactgcggtttcaactgcgcagaagcggttaatgtggctcctgttgactggttggct
catggacagaacgctgtggaactatacagtaaagagacaagaaagacttctctgtctcac
gacaaacttcttcttggagcagcttatgaagccgttaaggctctttgggaactctcagct
tctgcggaaaagaaaaatacaacgaacttgagatggaagagtttctgtgggaagaacgga
acacttaccaacgcgatccaggctcggttacagatggaagaggaaagaattgcagctctt
ggtagggattcttcgagcttgatgaagatggagaaggactttgattcaagctgtgaaagg
gaatgcttctcatgcttttatgatttgcatctcgcagcttctggctgcaagtgctctcct
gaagaatatgcgtgccttaaacacgcagatgatctttgttcatgcgatgagaaagatgga
ttcatccttgtccggtacacaatggatgagttaagctcgttggtcagagcattggaaggg
gaatcagatgatttaaagatatgggcttccaaggtcttaggaattgaactcagtgatgaa
gatcagacaaagactagttcagttataagccaggagaagaagctaaaggaaggttcattt
gatctcaacattgacttggagttggattgtcaagaagaccttaaagaagaagccagtacc
agtggtggcgagttaacttcctcagagaaccttggtgtatcagtcgagcctataaacctc
ggggtcttgatttttggaaagctttggtgcaataagcatgctatattcccaaaaggattc
aggagtcgtgttaagttctacaacgtgcttgatccaacaagaatgagcacttacatctcc
gaggtgttggatgcaggactcatgggaccattgttcagagttactctggaagaatctcca
gacgagagcttcttcaatgtttcagcccaacaatgctgggaaatggtgtttcagagagtc
aaagatacacgcacaagtcttggtcttcctagtttaccgcaattggagggtggtatcaat
gggcttcaaatgtttggtttcctctctccctctatagttcaggccattgaagctcttgac
ccaaaccatcgactcgttgagtactggaaccacaagaaccaagcctcagcagactctaaa
gatcacttcataacatcaaactgttccgtgagtttaaccaaaggaaaacttttcggagta
gatttgatgtag

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