Capsella rubella (pink shepherd's-purse): 17897840
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Entry
17897840 CDS
T02984
Name
(RefSeq) putative pectate lyase 2 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17897840
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17897840
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
17897840
NCBI-ProteinID:
XP_006303602
UniProt:
R0IE75
LinkDB
All DBs
Position
Unknown
AA seq
385 aa
AA seq
DB search
MASLFLTVSLLLAAFSSSLVEAAYSNGYTYTIPKLSLNPIDSCWRRNPGWAYNRRALADC
AVGFGKAAVGGKYGSVYVVTNPTDDPENPRPGTLRHAVIQAKPLWITFARDMVIVLQNEL
IMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHIGNRK
GSDGDAIAIFDSSHIWIDHCHFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDN
NVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGN
YFVAPDDSSKKQVTKRIDSGYDWRRWKWRTSKDVFKNGAYFVPSGYGTVTPLYKRAEWFP
VSHGSLVPSLTSSAGPLRCYSGRIC
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcttttcttaacagtttcacttctattggcagctttctcttcttctcttgta
gaggctgcctacagtaatggttacacttacaccattcccaaactatcactaaatcccatc
gattcttgctggcgtagaaaccctggttgggcgtataaccgtcgagcccttgcggattgc
gcggtagggtttgggaaagctgcggtcggggggaaatacgggtcggtttacgtggttaca
aacccaacagacgaccctgaaaaccccagacccggaactcttagacacgcggtgatccaa
gccaaaccactatggatcacgttcgcacgtgacatggtcatagtattgcaaaacgaactc
atcatgaacagctacaagacgattgatggaagaggagcaaaagtggaaattgcttatggg
ccatgcataacgatccagcatgtaagtcatgtcattatacatgggataagtatccatgat
tgtaaaccgggtaagtcgggtcgggtgcggagcagccccactcatattggcaaccggaaa
ggatcggatggtgacgcaatagccatttttgattcttcacatatttggattgatcattgt
cacttttctcggtgtcaagatggtttgatcgatgtgcttcatgcttctacggccgtcact
atttctaataactacttcacgcagcatgataaagtgatgttactcggacataatgacaat
aatgtggaggataagatcatgagagttacaattgcattcaaccattttggtccaggtctc
attgagaggatgccaagggtgaggagagggtatgcgcacgtagctaacaataggtacgaa
aaatggcaaatgtatgcgatcggaggaagtgctgatccaaccatctttagtgaaggcaat
tacttcgttgctcctgatgactctagcaaaaaacaggtgacaaagagaatagatagtgga
tatgattggaggagatggaaatggagaacgtccaaagacgttttcaagaacggagcttac
ttcgtgccgtctggatacggaaccgtcacgccgttgtacaaaagagcggagtggtttccg
gtgtcccacggctctctagtcccatctcttacttcttccgccggtcctctccgttgctac
tctggaaggatttgctaa
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