Capsella rubella (pink shepherd's-purse): 17897875
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Entry
17897875 CDS
T02984
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17897875
03036 Chromosome and associated proteins [BR:
crb03036
]
17897875
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
17897875
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
17897875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HHH_9
HTH_44
Tex_central_region
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
17897875
NCBI-ProteinID:
XP_023644551
LinkDB
All DBs
Position
Unknown
AA seq
1123 aa
AA seq
DB search
MSDPLEIRNNLKKRKLKHGPDEIFADIHERVVHSSKDHQSDGISIEEESNWIHAQLRPLL
KESDHDRINIDDIANFLVLHHVEKLEIPFIAMYRKEQCRSLLEIDFDLDHKPEAVWHKVL
WMIQDLDRQWLLLRERKVFLLGFYYSRLFQQESANQFLLDSLVRSVKAAETEREVDDVDS
KFCLHFPPPRDYTSCAQHNNTNSNSVLREAANKFGYSSEQVGLAWPLKKLLVGETEVAKE
TSPEEMALNYVSAMFEHPQAVLTGARHVAATELSCEPSIKKCVRRIYMQNALVSVSPTPL
GNMAIDSFHQLAGVKWLRGKPLTMFEGTQWLLIHKAEEDNLLQVSFKLPENCMYTLVSEC
SKHFPSAGVSSKCAQLWDKQRKLILEEALDGFLLPSMEKEARLLLTSKAKVQLLSEYGHN
LWNKVSEAPYTKHNPEFSTNEEAAPRVLACCWGPGNPATTFVMLDSFGELLDVLYADSIS
LPPKNADSRQCIKKDKDRLLKFMEDHKPGVVALGAANLSCARLKDNIFEVMFEMAGDFTE
VPNWIYDLSIVYVDESLPRIYQNSQISGEQLPHQSGIERRAVALGRYLQNPLAMVATLCG
QGREILSWNLHSLENFLDPDEKYRMVEQVMVDITNQVGIDLNLASSHEWLFSPLQFISGL
GLRKAASLQSSLIRAGSVFSRKDLINHGLAKQVFVNAVGFLRIRRSGLAASSSSQSFHLL
DDTRIHPESYGLAQELAKDIYDLRGGDNYNVNATERVRDDGAASLRNLVLDEYLGSRKQE
SKKETYSSIIRELCGGFKDWRRQYSEPSTDEELSMITGETITEGRIMQATVKRVRTGKAV
CLVDCGLTGTLLKEDYSDDGKDILDLSNRLFEGDVLTCKIKSTQKNLPRLFLVCKESEMR
NNGNLDPYYHEEGVQIEKEMAPKEKDRFKFRMIVHPSFRNITAHQATEYLSDKQFGDCVV
HPSSRGVNYLTLTLKIYDNVYVHKEIVEGMKEDDVCIGKTLRIGEETYECLDWMMDWYVG
PWVARLVTILNHRKFRTGTQPEVDDLLRIEKGKNPKMVVYGFGVSHEHPGTFILSYIRSI
HLHHEYIGLSPKGFKFRKKMFQELGMLVAYFKRHIHDRSLKHQ
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccactcgagatccgtaacaacttgaagaagaggaaactgaagcatggacca
gatgagatatttgctgatattcatgagagagtagtgcactcttctaaagaccatcagtca
gatggaattagcattgaggaagaaagcaattggatacatgctcaacttagacctctactt
aaagaatctgaccatgatcggatcaacatagatgacatcgcaaactttttggtgttacat
catgtggagaaactagagataccctttatagctatgtaccggaaggaacagtgccggagc
ttgttggaaatcgattttgatctagaccacaaacctgaggcagtgtggcataaggtcttg
tggatgattcaggacttggatagacagtggctccttcttcgggaaaggaaagttttctta
cttggtttctactattcaagacttttccagcaagagtctgccaatcagtttctcttagac
tcacttgttaggtctgtcaaagccgctgaaacggagagagaagttgatgatgtagactca
aagttctgcttgcattttcctcctcctcgtgattatacttcttgtgcacaacataataac
actaattctaattccgtcctgcgggaagctgcaaacaagtttggttatagctctgagcaa
gtgggacttgcgtggcctctcaaaaaattacttgttggtgagactgaagttgcaaaggaa
acatcaccagaggagatggcactgaactatgtgtctgcaatgtttgaacatccccaagct
gttcttacgggtgcacgccatgtggctgcaactgagttaagttgtgagccatccatcaaa
aagtgtgttcgtcgaatctatatgcagaatgcactagtgtcggtaagcccaacaccgctt
ggtaatatggctattgattctttccatcagcttgctggggtcaagtggttgcgtggaaag
ccattgaccatgtttgagggtacacaatggctcctcatccacaaggcagaagaagataac
cttcttcaggtatctttcaagctgccagaaaattgcatgtatacccttgttagcgaatgc
agtaaacactttccaagtgctggtgttagtagtaagtgtgctcaactctgggataaacag
aggaaattgatactggaggaagcactggatggttttcttttaccttcaatggagaaagaa
gcaagacttttgctaactagcaaagcaaaggttcagttgctttcagagtatggacataat
ttatggaacaaagtgtctgaagcgccgtacacaaaacacaaccctgagttcagtacaaat
gaggaagctgcaccgagggttctggcatgttgctggggacctggaaatccagcaaccaca
tttgtgatgctggactcatttggagagttgcttgatgtgctttatgcagattccatttca
ctgccaccaaaaaatgctgatagccggcaatgtatcaagaaggataaggatcgtctctta
aaatttatggaggaccacaaaccgggcgtcgtggctcttggagctgcaaacctgtcttgc
gctcgtctgaaggataatatttttgaggtcatgttcgagatggcaggagactttacagaa
gttccaaactggatatatgatttaagcattgtttacgtggacgaatctcttcctcggatt
tatcaaaactctcaaatctcaggtgaacagctacctcaccagtcagggatagagagacgt
gcagttgctcttgggcgttatcttcagaatccactggcaatggtcgcaactctctgcggc
caaggtagggagattttgtcctggaaccttcattctttggagaactttcttgacccagac
gagaagtataggatggttgaacaggtaatggttgacataaccaaccaggttggaattgac
cttaacttggcctccagccacgaatggcttttctctcctttgcagttcatttccgggctc
ggtcttaggaaagctgcatccttgcagagctctcttatcagagctggctcagtattttcc
cgcaaggacctgataaatcatgggcttgcgaaacaagtttttgtaaatgcagttggattt
ttgcgtatccgtaggagtgggcttgctgctagtagcagcagccagtcttttcacctattg
gatgacactaggatacatcctgaatcgtatggtcttgcacaggagttggcaaaagatata
tatgatctcagaggtggtgacaattacaacgtgaatgcgacagagcgtgtgagagacgat
ggggcagcgtctttgagaaatctagtccttgatgagtatctggggagcaggaaacaggag
agtaagaaggaaacctatagtagtatcataagagagttatgcggtggtttcaaggattgg
cggagacagtatagtgagccaagtacagatgaagagttatctatgattacgggtgaaaca
atcaccgagggaagaattatgcaggccactgttaagagagtaaggactggaaaagctgta
tgcttagtagactgcgggttaactgggacgcttttgaaagaagactactcagatgatggg
aaagatattttggatctgtcaaaccgactttttgaaggtgatgtccttacttgcaagatt
aaatcgactcaaaagaatcttccccgtctgtttcttgtctgcaaagaaagtgaaatgaga
aacaatggtaaccttgatccttattaccacgaagagggtgtccagattgagaaagagatg
gctccaaaagaaaaggaccgattcaagtttcgaatgattgttcatcctagcttccgaaac
ataactgctcaccaagcaacagagtacttgtctgacaagcagtttggagattgcgttgtt
catcctagctctcgaggagtcaattatttgactttgacattaaagatttacgataatgtg
tacgtgcacaaggagatagttgaaggtatgaaagaggacgacgtttgtattgggaagaca
ctgagaattggggaggaaacatatgagtgtctagattggatgatggattggtacgttggt
ccgtgggtagctcgtcttgtgaccattctcaaccatcgcaagttccgaaccgggacgcaa
ccggaagttgatgatctcctccggattgagaagggcaaaaatccaaagatggtagtctat
ggttttggggtttcacatgagcatccgggtactttcatactgtcttacatacgaagcatc
catctacaccatgagtatataggtttatccccaaaaggattcaagttcagaaaaaagatg
tttcaagaacttgggatgcttgtagcttattttaagaggcacattcatgatcggtcattg
aagcatcaataa
DBGET
integrated database retrieval system
