Capsella rubella (pink shepherd's-purse): 17898104
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Entry
17898104 CDS
T02984
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17898104
03036 Chromosome and associated proteins [BR:
crb03036
]
17898104
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
17898104
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
17898104
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
17898104
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
Helicase_RecD
AAA_22
DEAD
SLFN-g3_helicase
Mov-10_helical
PhoH
ATPase_2
AAA_16
AAA
NPHP3_N
DAP3
Motif
Other DBs
NCBI-GeneID:
17898104
NCBI-ProteinID:
XP_006306654
UniProt:
R0GUE1
LinkDB
All DBs
Position
Unknown
AA seq
999 aa
AA seq
DB search
MSVSGYKSDDEYSVIADKGEIGFIDYQNDGSAGCYNPLDEGPVVVSVPFPFKNEKPQSIL
VGETSFDSFTVKNTMDEPVDLWTKIYASNPEDSFTLSILKPPSKHSDIKEIQCFYETFTL
EDRMLEPGDTLTIWVSCKPKDIGLHTTVITVDWGIDRAERVVFLLAEDNISTSLTSKRPY
SRSRRAPKKDFAVDDYVMGSRPSKAVERRFKNRLPRYEIPKEIREMIEKKEMPDDLNEGL
TANNYANYYKYLLIMEELQLEEDMRAYDMENVSLKRRGLYLSLEVPGLAERRPSLVHGDY
IFVRNAYDDGTDQAYQGFIHRVEADEVHLKFAPEFHQRHTAGSVYNVRFTYNRINTRRLY
QAVDAAETLDRNFLFPSLHSGKRIIKTKPIVPISPALNAEQICSIEMILGCKGAPPYVIH
GPPGTGKTMTLVEAIVQLYTTQKNARILVCAPSNSAADHILEKLLCLEGVRIKDNEIFRL
NAATRTYEEIKPEIIRFCFFDELIFKCPPLKALNRYKLVVSTYMSASLLNAEGVNRGHFT
HIFLDEAGQASEPENMIAISNLCLSETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERL
FECDYYCEGDESYVTKLVKNYRCHPEILDLPSSLFYDGELVASKEDTDSVLASLNFLPNK
EFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVT
KIKEVLDRLEMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFN
VAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEREEFVEEPFNQEGSS
NYPQYPPEAEWNNSGELNKGGANEKGEWSDGWNNNGVTKEKDEWSGGWNNNGCTEEKDEW
SDGWNKGKNGLDPEGSSNAPQYPHEGEWNDSGEIKNGGTKENGEWSDGVSNNGGTKEKEE
YCSAWNNGSCGEEIKIDGEFETRAEFVAKEEDEWSDGWK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgagtggctacaagtctgatgatgagtactctgtaatcgcggacaagggagag
attggatttatagactatcagaatgatggatctgctggttgctacaatccattagatgaa
ggtccagttgttgtttctgttcctttcccgtttaagaacgagaagcctcaatctatactt
gttggagagacttcttttgattccttcactgtcaagaacactatggatgagcctgtagat
ttgtggaccaaaatttatgcatcaaaccctgaggattcttttaccctctccatcttgaaa
ccgccgtccaaacattcagacattaaagagatacaatgtttttatgaaacatttactctg
gaagacaggatgcttgagcctggtgacacgttaactatttgggtctcttgtaagcccaag
gacatcggtttacacaccactgttattactgttgactggggaatcgatagggccgagcgg
gttgttttccttttggccgaggataatatatcaacctctcttacttctaagaggccttac
tccagaagtagaagggctccaaagaaagattttgctgtggatgattatgtgatgggatca
cgcccttctaaggcagtagaacgtaggtttaaaaataggcttcctcggtatgaaattcca
aaggagattagagagatgatcgagaagaaggaaatgccggatgatttgaacgaaggtctt
acagcaaacaactatgcaaactactacaaatatttacttatcatggaagaattacaactc
gaggaagacatgcgagcttatgatatggagaatgtttcgctgaagagaaggggtctctac
ttgtccctcgaagttcctggccttgctgagagaagaccttcccttgttcatggagactat
atctttgtaagaaatgcctatgatgatggaactgaccaagcttatcaggggtttatacac
cgcgtagaggcagatgaagtgcatttgaaatttgcccctgagttccaccaacgccacaca
gccgggagtgtctataatgtgaggttcacatacaatcgaatcaacactagaaggttgtat
caggctgttgatgctgcagaaactttggatcgcaacttccttttcccgtccttgcactct
gggaaaaggattataaagacgaaacccattgtgcccatttcaccagctcttaatgcggag
caaatttgttccattgaaatgattcttggctgcaaaggagcaccaccatatgtgatccat
ggacctcctggtactgggaagactatgacattggtggaggctatagtacaactctataca
actcagaagaatgctcggattcttgtatgtgccccttccaatagtgcagctgatcacatt
ttagagaaactcctttgtctggaaggagttcgcatcaaggacaatgagattttcaggctg
aatgcagctactcggacatatgaagaaattaagcctgagattatccgcttttgcttcttt
gatgagttaattttcaagtgtccacctctcaaagcattgaatcgttacaaactcgttgtc
tcaacatatatgagtgcatcccttcttaatgcagaaggtgttaaccgtggtcatttcact
cacattttcttggatgaggctgggcaagcttcagagccagaaaacatgattgctatatca
aatctttgcttgtcagaaacagtggttgtgcttgctggagatccaaggcagttgggtcct
gttatatactcaagagatgctgagtcactcggcttggggaaatcctacttggaaagattg
tttgagtgcgattattactgcgaaggggatgagagttatgtgacaaagctagtcaagaac
tacagatgccacccagagattcttgatctcccatccagtctcttctatgatggagaactg
gtagcttccaaagaagacacagactctgttcttgcctcgttaaatttccttccaaacaaa
gaatttcccatggttttttatgggattcaaggatgcgatgagagggaaggcaacaatcca
tcatggttcaaccgcatagagatcagcaaagtaatagagaccatcaagagattaacagcg
aatgactgtgtgcaagaagaggatattggagttataactccttacagacagcaagtaaca
aagatcaaggaggttcttgacaggttagagatgactgaagtcaaagttggtagtgtggag
caattccaagggcaagagaaacaggtaatcatcatctcaactgtaagatctactataaaa
cacaacgagttcgacagagcttattgtctgggcttcctgagcaatccaaggaggtttaat
gttgctataacccgtgcaatctccctgctagtgattattggaaacccccatatcatatgc
aaggacatgaactggaacaagcttttgtggcgatgtgtggataataatgcttatcaagga
tgcggtttacccgagcgggaggagtttgtggaggaaccattcaatcaagaaggaagcagc
aattatcctcaataccctccagaagctgagtggaacaacagtggagagctcaacaaaggt
ggtgcaaatgagaaaggtgaatggtctgatggttggaacaacaatggcgtcacaaaagaa
aaagatgaatggtctggtgggtggaacaacaatggctgcacagaggagaaagatgaatgg
tctgatgggtggaacaagggcaaaaacgggctcgatccagaaggaagcagcaatgctcct
caataccctcacgaaggcgagtggaacgatagtggcgagatcaagaatggtggtacaaag
gagaacggcgaatggtctgatggagtgagcaacaatggtggaacaaaggaaaaagaagaa
tattgtagtgcttggaataatggcagctgtggtgaagagatcaagattgatggtgagttt
gaaaccagagctgagtttgtagccaaggaagaagatgagtggtctgatgggtggaagtaa
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integrated database retrieval system
