Capsella rubella (pink shepherd's-purse): 17898870
Help
Entry
17898870 CDS
T02984
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17898870
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17898870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
DUF7933
Motif
Other DBs
NCBI-GeneID:
17898870
NCBI-ProteinID:
XP_006306515
UniProt:
R0IQB4
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MAAVFLNLGVFFLSLLAIVAPQVKAHVAVFDSYWTQRQSDALKRTMGSYDPNPLNVTNHL
NYHVNLAVDAAESFNDTRRELTQVRSGHRKLKRSGKCLAYNPIDKCWRCDRNWANNRKKL
ADCVLGFGRKTTGGKDGPIYVVNDASDNDLVNPKPGTLRYAVTRDGPLWIIFARSMIIKL
QQELMIASDKTIDGRGAKVYIMEGAGLTMQYVNNVIIHSIYVKHIVPGNGGLIRDSEHHV
GLRTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISNSHFTDHQEVMLFG
ARDEHVIDKKMQITVAFNHFGKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTII
SQGNRFIAPPSEQAKQITKREYTPLAEWKSWNWQSEGDYFLNGAYFVQSGKANAWSPKPQ
NPIPNKFAIRPKPGTMVRKLTMEAGALGCRQGQAC
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagtgtttttgaatcttggcgtcttcttcttatcgttattagctatagtggct
ccacaggttaaagcccacgttgctgtctttgatagttactggacgcaacgtcaaagcgat
gcactgaaacgaaccatggggtcttacgatcctaatccacttaacgtcaccaaccacttg
aactaccatgtcaatttagcagtggatgccgcggaatcattcaatgatacaaggagagag
cttacacaggtgagaagtggtcacagaaagctaaaacgcagcggaaaatgcctagcttat
aatccaatagacaaatgctggcgatgcgaccgtaactgggcaaataaccggaagaaacta
gcggattgtgtgctcggatttggccggaaaaccacaggagggaaagacgggccgatctac
gtcgtcaacgatgcttctgacaacgatcttgtcaaccctaaaccaggaacgttaagatat
gcagtgactcgagacggacctctttggatcatatttgcaagaagcatgattattaaactg
caacaagagctgatgatagcgagcgacaaaacgatcgatggaagaggagctaaggtttat
atcatggaaggtgctggattaacaatgcaatatgtgaataatgtgatcatacacagtatt
tatgtcaagcacattgttcctgggaacggtgggttgatcagagactctgagcatcacgta
gggcttaggacaaaaagtgatggtgatggaatcagcttgtttggagcaacaaatatttgg
atcgatcatgtctcaatgacaagatgcgcagatggtatgatcgatgcaattgacggctcc
actgccgtaactatctctaacagtcatttcaccgaccaccaagaggtgatgctgtttggg
gcgagagacgaacacgtgatagacaagaaaatgcagataacggttgcgtttaaccacttt
ggaaagagactggaacagagaatgccccgttgcagatacggaacgatccatgtggtgaac
aatgactacacacattgggaaatgtatgcgattggtggaaacatgaaccctacaatcatt
agtcaaggcaaccgcttcattgctcctcctagcgaacaagccaaacagattacgaagaga
gagtacacgccattagctgaatggaaatcctggaactggcaatcagaaggagattacttt
ctcaacggagcttattttgttcaatccggaaaagcaaatgcgtggagccctaaaccgcaa
aacccgatcccgaacaagtttgccattcgacctaaaccgggaacgatggtcaggaaactt
accatggaagcaggagcacttggctgcagacagggtcaagcatgctga
DBGET
integrated database retrieval system
